Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91139g00005 GACTCCGACGGAAGCGGAACCCACTCCTCCTCCTCCGATCTCCTCCGCCATTCCGACCTCTCCGCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGCCGCCACTCTTCCTCCACGACCACCGCCACCCCCGCCGAAGTGTCAAAGATCCAGTCCTTCCTGACCTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACTTGGTCCTGCTCCTCTCTATGCTTCGCACTCTTCCACCTCCACTGTATCCAATCATGGGCCCGCCAAGCCTCCCATCTCGCTGCTGCACGCGCCGCCACGCGCCTCCCTATCACACAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATTACTCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGTGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGCCACCATTGCCTTCTTTTATGCCACCCGGGACCCTGCCCGTCCTGCCCGAAACTCGTCAAAGTTCGTTGCTTTTGTGCCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTTTCGTGTGGGAAAGTTTGTGGGAAGGTTTTGGATTGTGGGGTTCATGGTTGTGCTGAGACTTGTCATGAGGGGGAATGCCCTCCCTGCCGGGCGCGCAGTGTGTACCAGTGCCGGTGTGGGAAGAAGAAAGAAGAGAGGGAGTGCTGTGACCGTGATTTCGGGTGTGGCGAGCCATGTGAGAAGAGGCTTGGATGTGGGAAGCATGTGTGTGAGAGAGGGTGCCATGTTGGGGAGTGTGGAGACTGCCCCATGCAAGGGAAAAGGACATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTCTTGTGCCCTTGTGTGGGGCTACTTGTGATAAGATGCTTAGTTGTGGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGCGCGTGTGTCGAGACTTGTAGGACTGTTGTGAAGAAGTCCTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATACGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCGTGCTCAGAGGTTTGTGACAAGAGGCTTAGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCATGTGCTCCTTGCCCAATAATGGTCACAATTGGGTGTGCGTGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGTCCTATTGCTCCTTTATGCCGTCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCTTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAGTACTCATGTGGCCATGCTTGCAAATTAAGGTGTCATGGTGCTAAACCTCCGCCTAATCGAGAGTTTACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGCACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAGCTGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGACAATTTATGTGGTAATCCTCTTCCATGTGGTAATCATTATTGTACTAAAACTTGCCATGCCTTGTTGAATCCGTCCTCCATGAACCGGCTACCGCAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCATGCGATAAGGAAAGAGAACCTAAATGTCAGCATCGTTGCCCTCGGCAATGCCATCCTGGAGACTGCCCTCCATGCAAAGTGCTGATCAAGCGGTCTTGTCATTGTGGCTCGATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCCGCTAAAGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGCTACCAAATTGTACCCATCTATGCCCTGAGACATGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCACCGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCATGCTGCTGGTTCCCACCCGAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGACGGAACTACATTTACGTAAATCTCAGGTTACAGAGGTAAAAGAGACAGATAATGAAAAGTCTGCTCCGAAGCGACGAAAAAGGCAGAAACGGGTACAAGAATCCAAGGAAACAACAAAACTACAGAAAATTATTTCCTCAACAAAGAAGCTCCTTCTATACCTTTTTATTTTGATCATACTTGTTGCTGCTACATATTATGGATACAAGGGACTCCTATGGCTCAATGATTGGATGAATAAAGTTGATGAACAAAGACAAAGACATCCTAGAAGGATCAGATGA 2586 0.4957 DSDGSGTHSSSSDLLRHSDLSASIFKPYFEFTGRHSSSTTTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASHLAAARAATRLPITQQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCAKIEDVRRCGFKEFSCGKVCGKVLDCGVHGCAETCHEGECPPCRARSVYQCRCGKKKEERECCDRDFGCGEPCEKRLGCGKHVCERGCHVGECGDCPMQGKRTCPCGKRVYEGMPCDVLVPLCGATCDKMLSCGYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRIRDCGRHACKRKCCDGDCPPCSEVCDKRLRCKNHKCPSPCHRGACAPCPIMVTIGCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCRHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHGAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGAERMMVCSDKSQFACDNLCGNPLPCGNHYCTKTCHALLNPSSMNRLPQSEPCEDCSLPCDKEREPKCQHRCPRQCHPGDCPPCKVLIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKKEWPCHDVQAAYHAAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVETELHLRKSQVTEVKETDNEKSAPKRRKRQKRVQESKETTKLQKIISSTKKLLLYLFILIILVAATYYGYKGLLWLNDWMNKVDEQRQRHPRRIR 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91139g00005 861 SMART znfxneu3 281 300 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 688 709 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 501 546 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 472 493 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 388 407 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 625 643 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 335 355 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 583 615 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 415 434 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 176 194 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SMART znfxneu3 228 247 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 SUPERFAMILY RING/U-box 59 136 - -
Stsc91139g00005 861 CDD NF-X1-zinc-finger 378 426 - -
Stsc91139g00005 861 CDD NF-X1-zinc-finger 271 318 - -
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 335 354 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 626 642 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 583 593 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 482 492 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 281 299 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 388 406 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 228 246 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 176 193 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 415 433 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 Pfam NF-X1 type zinc finger 689 707 IPR000967 GO:0005634|GO:0008270
Stsc91139g00005 861 CDD NF-X1-zinc-finger 164 212 - -
Stsc91139g00005 861 CDD NF-X1-zinc-finger 613 654 - -
Stsc91139g00005 861 MobiDBLite consensus disorder prediction 777 806 - -
Stsc91139g00005 861 CDD NF-X1-zinc-finger 325 374 - -
Stsc91139g00005 861 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 34 510 IPR034078 GO:0003700
Stsc91139g00005 861 CDD NF-X1-zinc-finger 218 266 - -
Stsc91139g00005 861 CDD NF-X1-zinc-finger 405 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91139g00005 Stsc-Chr91139 31866 38434 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Stsc91139g00005 zf-NF-X1 0.0027 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91139g00005 K15683 - gmx:100799540 1487.24