Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91139g00004 ATGAGACCACTTCCCTCCTCCGCCATCCTCCGTCTCTCCGCCGCCGTGATACTCACGCTCTCTTTGCTGATCTCCAGTTCACATGCTTTCGGCTCCGGCGCCACCCTTGCCGTCACTGACGTCTCCGCCACCGTTTGTGGCGTCGTCGCCGGAGAATCCACCCACCGTATTGAGTGCTCACGCCTCGGAAGCCAGCTTGTAACCGCCGTCCCTCCTAACGTCTCATTCTCCACGCTCTCCGGCGGCGCCACCTTCTTCTGCGGCCTCAGGTCCGGCAACGGCGCCTTGCTGTGTTGGAACACCGCCACCACCACCAACGGAACCTTCACACCTAAGAGACTCTACTACAACGATACTGTTCTATTAGAGAATCTCTCCGTCGGAGAAACCCACGTTTGCGCCACCGTGGTCGGCGCCGGAACCGTTACGTGCTGGAGAACCAGCAAAACGTTCAAACTCCCATCTGGGTCTCTTCAATTCTCTTCAATCTCATCTGGGTCTGGATTCTCTTGTGGGATTCTGAAGAATAGTTCTCAAGTTCGGTGTTGGGGTGAAACGGTAATTTCAACAAAGATTGAGAATGGGTTCAAGAACATGTCTATGTGGAGCATTGTCGCTGGTGGTTCACAACTTTGTGGGTTGAATTCAACTGGGTTTCTGGTTTGCATAGGGAACAACAACAACAGTGATGTTCCAAAGCATGAAGCTTGGGAGTTTGGTGAATTAGCAGTTGGTGGTAGCCATGGATGTGCTTTGAGAAGGTTGAATGGAAGTGTTGTTTGCTGGGGTGGTAATGGTAATTTCAACGTGGAAGTAACAGAAGATGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAACTTCACTTGTGGATTAGTGGCACGTAATCTTACTGTTCTTTGTTGGGGTCCTGGTTGGCCTAATAATGATAATAATAACGGTTCAAGATTTGAACTTCCATTGCCTAGTGTTCTTCCGGGTCCTTGTGTTCAATCCTCTTGTGATACTTGTGGTACATATGCTGATTCTCAAGCTCTGTGTTCTGATTCTGATAGCAACATTTGCAAGCCTTGTTGGCCTCCAATTGGAGCTCCACCGCCGGCGATAGTTCCATCTTCGCCGCCTCCGCGGAGGTCGCGGTCAAGGGGGTTGACTCGTGGTTTGTTGGCATTTGCTATTGTTGGATCAATTGGTGCTGTGGCTGGTATTTGCACAATTGTTTATTGCTTGTGGAATGGGGTTTGTTTTGGGAAGAAGAAAGTGCACAATTCTGTGCAGCCAACAATCACAAGAGGTAGCAGCACTTCAAGTGGTGTTTCCAACAATGGTAGGAACCATAGCAGGCCTCTCTCGAGGACATCGACGATTATGCGACAAGGCTCGAGGATAATGCGGCGGCAGAGGAGTGGCACCTCATCCTCAAAACACCCTGATAGGGCAGAGGAATTCACCTTGGCCGAGCTAATAGCTGCGACGGACAGCGAAATTGGCTCGAAATTGAAGAAGTTTCAAGAGAAAGAGAGCGCATTTCAGTCCGAATTGTCCTTCTTGTCGCGGCTACACCACAAGCACTTGGTTAGGCTAGTTGGTTTCTGTGAGGAGAAAGAGGAGAGGCTCTTGGTTTATGATTACATGAAGAATGGTGCATTGTATGATCATTTGCATGCTAAGAACAATGTGGAGAAGAGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATCGCCTTGGACGCCTCCCGGGGGATCGAGTATCTGCACAATTACGCGGTTCCATCAATAATTCATAGGGATATCAAGTCCTCCAACATCCTCCTCGACGCATATTGGACTGCTAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCGGAGCCAGACCGCGATCATCGGCCGATGAAAGCAGCCGGAACAGTTGGATACATTGATCCGGAATACTATGGCCTAAATGTGATCACAGCAAAGAGTGATGTCTACGGCTTCGGAGTGGTTCTTTTAGAGCTATTAACCGGAAAGCGAGCCATATTCAAGAACGGCGAAGATGGCGAGACGCCAACGAGCGTGGTGGATTATGCAGTGCCTGCAATTTTGAGTGAGGAATTGGTGAAGATTTTGGACCCTAGAGTTGGACCACCAGAGGCAAATGAAGGTGAGGCAGTGGAATTGATGTCACAAATTGCAATGCTTTGTGTGAATTTGGAAGGAAAAGATAGACCAACAATTTCTGATATTGTTACAAATTTAGATCGTGCTTTGCTTCTTTGTGAAGGTTCTCATAATCATGAGAGCAATTCCACTGGGATAATCTCCATTGTTTCAGATTGA 2325 0.4817 MRPLPSSAILRLSAAVILTLSLLISSSHAFGSGATLAVTDVSATVCGVVAGESTHRIECSRLGSQLVTAVPPNVSFSTLSGGATFFCGLRSGNGALLCWNTATTTNGTFTPKRLYYNDTVLLENLSVGETHVCATVVGAGTVTCWRTSKTFKLPSGSLQFSSISSGSGFSCGILKNSSQVRCWGETVISTKIENGFKNMSMWSIVAGGSQLCGLNSTGFLVCIGNNNNSDVPKHEAWEFGELAVGGSHGCALRRLNGSVVCWGGNGNFNVEVTEDVSFEVIVSGSNFTCGLVARNLTVLCWGPGWPNNDNNNGSRFELPLPSVLPGPCVQSSCDTCGTYADSQALCSDSDSNICKPCWPPIGAPPPAIVPSSPPPRRSRSRGLTRGLLAFAIVGSIGAVAGICTIVYCLWNGVCFGKKKVHNSVQPTITRGSSTSSGVSNNGRNHSRPLSRTSTIMRQGSRIMRRQRSGTSSSKHPDRAEEFTLAELIAATDSEIGSKLKKFQEKESAFQSELSFLSRLHHKHLVRLVGFCEEKEERLLVYDYMKNGALYDHLHAKNNVEKSSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDAYWTARVSDFGLSLMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVITAKSDVYGFGVVLLELLTGKRAIFKNGEDGETPTSVVDYAVPAILSEELVKILDPRVGPPEANEGEAVELMSQIAMLCVNLEGKDRPTISDIVTNLDRALLLCEGSHNHESNSTGIISIVSD 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91139g00004 774 Pfam Protein tyrosine and serine/threonine kinase 503 748 IPR001245 GO:0004672|GO:0006468
Stsc91139g00004 774 SUPERFAMILY RCC1/BLIP-II 67 302 IPR009091 -
Stsc91139g00004 774 MobiDBLite consensus disorder prediction 426 469 - -
Stsc91139g00004 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Stsc91139g00004 774 FunFam Serine/threonine-protein kinase-like protein CCR4 544 767 - -
Stsc91139g00004 774 Gene3D Phosphorylase Kinase; domain 1 490 544 - -
Stsc91139g00004 774 MobiDBLite consensus disorder prediction 426 477 - -
Stsc91139g00004 774 Gene3D - 24 199 IPR009091 -
Stsc91139g00004 774 Gene3D - 200 358 IPR009091 -
Stsc91139g00004 774 SMART serkin_6 390 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91139g00004 774 ProSiteProfiles Protein kinase domain profile. 462 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91139g00004 774 Gene3D Transferase(Phosphotransferase) domain 1 545 766 - -
Stsc91139g00004 774 SUPERFAMILY Protein kinase-like (PK-like) 501 748 IPR011009 -
Stsc91139g00004 774 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 198 758 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91139g00004 Stsc-Chr91139 23920 26313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91139g00004 2 774 Receptor kinase-like Gene Family AT3G55950 53.230 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc91139g00004 PK_Tyr_Ser-Thr 3.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91139g00004 - - gmx:100805573 995.727