Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91136g00007 ATGGGGGACAGGGAGAATTTCGATGTCGATAGAGACCGGGATCGTGTGAATTATTCGACTAGTATGGCTTCGGATTGGAGGTTCGGTGTTGGGAACGTTGCGAATTCAATGGTGGATTCATATGTTACAAACTTTTGGGACCATTCCAATTCCCAGAACTTGGGGTTTTGTGACATTAATATTCAGAACAATGGCGGCTCTTCGAACATGAATGTGGTCGGAAAAGATGGATTCAGCTATGGTAGAGGCGGTCATGATCATAGGACACTAGAAATGGGTTGGAACCATGCTAGTTCTCTGTTGAAGGGCGATAACAATGCTTTCTTGCCGAACGGACCGGCGATGCTTCCCCAGAGTTTATCTCAGTTTCCGGGTGATTCTGGATTCATTGAGCGGGCTGCGAGACTCTCGTGCTTCGGCGCAGGGTCCGGGGACATGGTGAGCTCATTTGGGATTCCTCAATCTATGAACCTTTATGCTAGGATTGGGGAAACAATGCAGGGAACTGGAGATGCTCTTTTAGGACACGGATTAAGATCGGGAGCACTGGGAGGACAATCTCATAAAAGTGATCCGAATTTAGTTGAAGCTGCGAAAGATGATGATAAAGAAATGTCTTTACAGGATGATAAAAGAAGCGAAAATCTTGCAGTATCTCATGAAGAAGGGAAACAAGCTCTTGGTGGTTCTGCTAATGAATCTGATCGAGCGGAATCGAGTGGCCAAGACGATTCCCCAATGTTGGAGTCTACAAGTGGGGAGCCTTCGAATAAGGGACTAAGCTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAAAGATAAAGCCAATGGAAGTCCTGAACAATCCGGTGCAGATGCGAAGGAGAATTCCGGGAGTCGACAGCAGAAGGAGGAGGGAAAACCCACTCCATCAACCAAGGGGTCTGGGAAGAACGCCAAGCAGGGTTCTCAAGCATCCGATCCGCCTAAGGAGGAGTACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGTCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAGCGAATGAAGTTTCTTCAAGACCTTGTACCCGGATGCAGCAAGGTCACTGGCAAGGCGGTGATGCTTGATGAAATTATAAACTATGTACAGTCTCTTCAAAGACAGGTTGAGTTCTTGTCAATGAAACTTGCCACGGTAAATCCGCGGATGGATTTTAATATCGAGGGATTGCTTGCTAAAGAAATTCTTCAGCAACGGGCCGGTACTTGTTCCGCACATGGGTTTCCTCCAGAATTGTCCATGGCTTTTCCGCCATTACATCCGCCTCGACCAGGTCTTGTTCCTTCAGCTCTTCCTAGCATGGCAAATTCATCAGATATACTTCGGCGGACGCTTCAACCAAATTTGGCTTACTTGAATGGAGGATTTAAAGACCCAAATCAGCTTCCTGAAGTCTGGGACGACGAGCTTCACAACGTTGTACAGATGACATTTCCGACACCTGCCCCGCCGAGTTGCCAAGACTTGGATGGTAAGCTAACCTTTTTCGCCTACTAA 1563 0.4722 MGDRENFDVDRDRDRVNYSTSMASDWRFGVGNVANSMVDSYVTNFWDHSNSQNLGFCDINIQNNGGSSNMNVVGKDGFSYGRGGHDHRTLEMGWNHASSLLKGDNNAFLPNGPAMLPQSLSQFPGDSGFIERAARLSCFGAGSGDMVSSFGIPQSMNLYARIGETMQGTGDALLGHGLRSGALGGQSHKSDPNLVEAAKDDDKEMSLQDDKRSENLAVSHEEGKQALGGSANESDRAESSGQDDSPMLESTSGEPSNKGLSSKKRKRIGQDADKDKANGSPEQSGADAKENSGSRQQKEEGKPTPSTKGSGKNAKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIEGLLAKEILQQRAGTCSAHGFPPELSMAFPPLHPPRPGLVPSALPSMANSSDILRRTLQPNLAYLNGGFKDPNQLPEVWDDELHNVVQMTFPTPAPPSCQDLDGKLTFFAY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91136g00007 520 FunFam Basic helix-loop-helix transcription factor 334 406 - -
Stsc91136g00007 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Stsc91136g00007 520 MobiDBLite consensus disorder prediction 198 219 - -
Stsc91136g00007 520 CDD bHLH_AtBPE_like 327 412 - -
Stsc91136g00007 520 MobiDBLite consensus disorder prediction 198 325 - -
Stsc91136g00007 520 MobiDBLite consensus disorder prediction 243 258 - -
Stsc91136g00007 520 Gene3D - 334 407 IPR036638 GO:0046983
Stsc91136g00007 520 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 229 429 IPR024097 GO:0006355
Stsc91136g00007 520 MobiDBLite consensus disorder prediction 298 320 - -
Stsc91136g00007 520 Pfam Helix-loop-helix DNA-binding domain 340 388 IPR011598 GO:0046983
Stsc91136g00007 520 SMART finulus 343 393 IPR011598 GO:0046983
Stsc91136g00007 520 MobiDBLite consensus disorder prediction 259 280 - -
Stsc91136g00007 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 406 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91136g00007 Stsc-Chr91136 30742 34823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91136g00007 37 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.610 2.61e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91136g00007 HLH 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91136g00007 - - gmx:100797720 625.165