Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91136g00006 ATGGGGGACAGGGAGAATTTCGATGTCGATAGAGACCGGGATCGTGTGAATTATTCGACTAGTATGGCTTCGGATTGGAGGTTCGGTGTTGGGAACGTTGCGAATTCAATGGTGGATTCATATGTTACAAACTTTTGGGACCATTCCAATTCCCAGAACTTGGGGTTTTGTGACATTAATATTCAGAACAATGGCGGCTCTTCGAACATGAATGTGGTCGGAAAAGATGGATTCAGCTATGGTAGAGGCGGTCATGATCATAGGACACTAGAAATGGGTTGGAACCATGCTAGTTCTCTGTTGAAGGGCGATAACAATGCTTTCTTGCCGAACGGACCGGCGATGCTTCCCCAGAGTTTATCTCAGTTTCCGGGTGATTCTGGATTCATTGAGCGGGCTGCGAGACTCTCGTGCTTCGGCGCAGGGTCCGGGGACATGGTGAGCTCATTTGGGATTCCTCAATCTATGAACCTTTATGCTAGGATTGGGGAAACAATGCAGGGAACTGGAGATGCTCTTTTAGGACACGGATTAAGATCGGGAGCACTGGGAGGACAATCTCATAAAAGTGATCCGAATTTAGTTGAAGCTGCGAAAGATGATGATAAAGAAATGTCTTTACAGGATGATAAAAGAAGCGAAAATCTTGCAGTATCTCATGAAGAAGGGAAACAAGCTCTTGGTGGTTCTGCTAATGAATCTGATCGAGCGGAATCGAGTGGCCAAGACGATTCCCCAATGTTGGAGTCTACAAGTGGGGAGCCTTCGAATAAGGGACTAAGCTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAAAGATAAAGCCAATGGAAGTCCTGAACAATCCGGTGCAGATGCGAAGGAGAATTCCGGGAGTCGACAGCAGAAGGAGGAGGGAAAACCCACTCCATCAACCAAGGGGTCTGGGAAGAACGCCAAGCAGGGTTCTCAAGCATCCGATCCGCCTAAGGAGGAGTACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGTCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAGCGAATGAAGTTTCTTCAAGACCTTGTACCCGGATGCAGCAAGGTCACTGGCAAGGCGGTGATGCTTGATGAAATTATAAACTATGTACAGTCTCTTCAAAGACAGGTTGAGTTCTTGTCAATGAAACTTGCCACGGTAAATCCGCGGATGGATTTTAATATCGAGGGATTGCTTGCTAAAGAAATTCTTCAGCAACGGGCCGGTACTTGTTCCGCACATGGGTTTCCTCCAGAATTGTCCATGGCTTTTCCGCCATTACATCCGCCTCGACCAGGTCTTGTTCCTTCAGCTCTTCCTAGCATGGCAAATTCATCAGATATACTTCGGCGGACGCTTCAACCAAATTTGGCTTACTTGAATGGAGGATTTAAAGACCCAAATCAGCTTCCTGAAGTCTGGGACGACGAGCTTCACAACGTTGTACAGATGACATTTCCGACACCTGCCCCGCCGAGTTGCCAAGACTTGGATGGTTCAGGTTCAGGTTCTGTGCCTTCAGGTCAAACAAAAACCGAACCTTGA 1587 0.4732 MGDRENFDVDRDRDRVNYSTSMASDWRFGVGNVANSMVDSYVTNFWDHSNSQNLGFCDINIQNNGGSSNMNVVGKDGFSYGRGGHDHRTLEMGWNHASSLLKGDNNAFLPNGPAMLPQSLSQFPGDSGFIERAARLSCFGAGSGDMVSSFGIPQSMNLYARIGETMQGTGDALLGHGLRSGALGGQSHKSDPNLVEAAKDDDKEMSLQDDKRSENLAVSHEEGKQALGGSANESDRAESSGQDDSPMLESTSGEPSNKGLSSKKRKRIGQDADKDKANGSPEQSGADAKENSGSRQQKEEGKPTPSTKGSGKNAKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIEGLLAKEILQQRAGTCSAHGFPPELSMAFPPLHPPRPGLVPSALPSMANSSDILRRTLQPNLAYLNGGFKDPNQLPEVWDDELHNVVQMTFPTPAPPSCQDLDGSGSGSVPSGQTKTEP 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91136g00006 528 Pfam Helix-loop-helix DNA-binding domain 340 388 IPR011598 GO:0046983
Stsc91136g00006 528 FunFam Basic helix-loop-helix transcription factor 334 406 - -
Stsc91136g00006 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 198 219 - -
Stsc91136g00006 528 CDD bHLH_AtBPE_like 327 412 - -
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 198 325 - -
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 243 258 - -
Stsc91136g00006 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 406 IPR036638 GO:0046983
Stsc91136g00006 528 Gene3D - 334 407 IPR036638 GO:0046983
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 298 320 - -
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 499 528 - -
Stsc91136g00006 528 SMART finulus 343 393 IPR011598 GO:0046983
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 259 280 - -
Stsc91136g00006 528 MobiDBLite consensus disorder prediction 500 528 - -
Stsc91136g00006 528 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 229 429 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91136g00006 Stsc-Chr91136 30742 34875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91136g00006 37 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.513 3.46e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91136g00006 HLH 6.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91136g00006 - - gmx:100797720 630.557