Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91131g00004 ATGAAACTAAAGCAGAAATTTTTCAAGCAAAATGGTGGTTATATTCTGTTACAACAGCTCTCCACAAGAGGAGAATCCTCTCAAACAGTTCAAATCTTCACAGAAGATGAACTGAAGAAGGCCACAAAGAACTACGATGATAAGCTAATCATTGGCAGAGGAGGTTATGGCACTGTCTTCAAAGGAGTTCTAACCAAAAACAGAATTGTGGCAATCAAGAAGTCCAAAATAGTGGACAAAAGCCAAATGGATCAGTTCATCAACGAGGTTGTTGTTTTGTCTCGAATCAATCATCGCAACGTAGTGAAACTCTTAGGCTGTTGTTTAGAGACAGAAGTTCCTTTACTGGTTTATGAATTTATTAACAATGGTACCCTTTTCAATTTCATCCATCATCATCACAAGGGTAGAAATGCAAATAGTTTGGTTTGGGAGACCCGTTTGAGAATAGCAACAGAAGCAGCAGGAGCTTTGTCATATTTGCATTCAGCAGCTTCAATACCAATTATCCATAGAGATATCAAGAGTGCAAATATTCTGTTAGATAGCACTTACACTGCTAAAGTATCTGATTTTGGAGCTTCAAGATTTGTTCCACAAGATGAAATTGCATTAGCCACCATGGTGCAAGGAACTATTGGATACTTGGATCCCGAGTACATGCAAACAAGTCAATTGACTGAGAAAAGTGACGTGTATAGCTTCGGCGTGGTGCTTGCAGAGCTTCTAACAGGCGAACAACCTCTTTCTTTTGACAGATCGGAAGAGAAAAGAAGTCTTGTTATATACTTCCTTTCTTGCTTGAAAGCTAATCGCTTGTTCGATGCGATTCAAGTTGGAATTCTAAATGAGAAAAACGAGCAACAGATCAAGGAGGTTGCTATTCTTGCTGCAATGTGTTTAAGCCTTAAAGGGGAAGATAGACCAAGTATGAAGGAAGTGGCAATGGAATTGGAAGGAATTAGGGTATTGCAAAAGCATAATAATGGAGACAACAATAATCCAGAAGAAACTCAATGCTTG 1023 0.3881 MKLKQKFFKQNGGYILLQQLSTRGESSQTVQIFTEDELKKATKNYDDKLIIGRGGYGTVFKGVLTKNRIVAIKKSKIVDKSQMDQFINEVVVLSRINHRNVVKLLGCCLETEVPLLVYEFINNGTLFNFIHHHHKGRNANSLVWETRLRIATEAAGALSYLHSAASIPIIHRDIKSANILLDSTYTAKVSDFGASRFVPQDEIALATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLAELLTGEQPLSFDRSEEKRSLVIYFLSCLKANRLFDAIQVGILNEKNEQQIKEVAILAAMCLSLKGEDRPSMKEVAMELEGIRVLQKHNNGDNNNPEETQCL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91131g00004 341 CDD STKc_IRAK 51 321 - -
Stsc91131g00004 341 Gene3D Transferase(Phosphotransferase) domain 1 121 339 - -
Stsc91131g00004 341 PIRSF ILK 5 332 - -
Stsc91131g00004 341 SUPERFAMILY Protein kinase-like (PK-like) 24 319 IPR011009 -
Stsc91131g00004 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc91131g00004 341 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Stsc91131g00004 341 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 328 IPR045274 GO:0007166
Stsc91131g00004 341 ProSiteProfiles Protein kinase domain profile. 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91131g00004 341 FunFam Wall-associated receptor kinase 2 15 120 - -
Stsc91131g00004 341 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91131g00004 341 FunFam Wall-associated receptor kinase 2 121 340 - -
Stsc91131g00004 341 SMART serkin_6 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91131g00004 341 Gene3D Phosphorylase Kinase; domain 1 17 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91131g00004 Stsc-Chr91131 31180 32202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91131g00004 2 339 Receptor kinase-like Gene Family AT1G21230 59.172 2.57e-138 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc91131g00004 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91131g00004 - - gmx:100819535 506.138