Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91128g00002 ATGAAGAAAGCAATTAGCACAAGTAGTGAATCTTCCAAACTTGATCGCAAAACCATTGAGAGGAACCGTAGAATTCACATGAAAGCTCTCTGCTTCAAGCTAACTTCTCTTATTCCTCCTAACCATACATTCCCACAATATTCCAAATCCAAGGGCGCAATATCACAGCAAGACCAGCTGGATCTGGCAGCAAGGTACATAAAGCATATGACAGAAAGAATAGAGAAATTGAATAAGCAGAAACAGCAAGTCATCATGGAGTCAAAAAACAACAAAATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACAATAATGAGCAAAAACAATGTAGACACAAAATTGCCACTGCTTGAGTTAAGAGACTTTGGTTCTGGCATAGAAGTTGTGTTGGTTTGTGGATTGAGAAACAAGACCTTCATGTTTTATGAAGTTATTAGTGTTCTTGAGGAAGAAGGTGCTGCAGTTGTTACTGCAAGCTTCTCAACAGTGGGGGACAAAATATTTTACATTATTCATGCTCAGGAAAAAATATCAAGAGTTGGTGTAGAGACGACAAGGGTGCATGAGAGGCTTCAGGAGTTCATTGCCCCAATACCAATAGAAACGTGGGACGACTATCTTTGA 651 0.3594 MKKAISTSSESSKLDRKTIERNRRIHMKALCFKLTSLIPPNHTFPQYSKSKGAISQQDQLDLAARYIKHMTERIEKLNKQKQQVIMESKNNKINNNNNNNNNNNNNNNNNNTIMSKNNVDTKLPLLELRDFGSGIEVVLVCGLRNKTFMFYEVISVLEEEGAAVVTASFSTVGDKIFYIIHAQEKISRVGVETTRVHERLQEFIAPIPIETWDDYL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91128g00002 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 70 IPR011598 GO:0046983
Stsc91128g00002 216 MobiDBLite consensus disorder prediction 91 112 - -
Stsc91128g00002 216 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 202 - -
Stsc91128g00002 216 SMART finulus 17 76 IPR011598 GO:0046983
Stsc91128g00002 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 87 IPR036638 GO:0046983
Stsc91128g00002 216 Coils Coil 60 106 - -
Stsc91128g00002 216 Gene3D - 2 103 IPR036638 GO:0046983
Stsc91128g00002 216 Pfam Helix-loop-helix DNA-binding domain 16 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91128g00002 Stsc-Chr91128 6742 8531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91128g00002 1 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 31.220 9.44e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91128g00002 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91128g00002 - - gmx:100790403 239.195