Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91125g00001 ATGTCCTCCCATGATCAAGTATTAGCCTCCCTTCTCTCTCAGATTGTCCTTTCCTTCGACGGCGCCGTTTTGGGCCTCGCCTTGGCCTACGCCGCCATCCGCTCCATTCGCAACTTCACCGCCAACTCCGCCTCCCTCCGCAAGCTCCGTCGCGCCCCCTCCGTCTCCGTCTCTGACCTCCGCTCGGTCCTCTCCGACTCCGATGCCAATTCCGACGATGGTAGAATCGTAGTTGTCCGTGGCACCGTTGAGACCAAGGCTGCCGTTGACGGCAGCTGGAAGAGCCTGAGGCCATGCACCTTGGTCTCTCGTGAGTCCGGCGACAAAGCCGTTGTCCTTCAAATAACTCAAACGTGTATATACAATGAGTGGAAGGGCTTATTTGGATGGACTTCAGATCTTCGAGCTATATTTGCCAGGTCTTGGAGACAACCAGAGTCTAAATTCCTTAGAAAGGTGCCTTTTGTTCTGGTTGATGTTGGACGGCAGCCAAGTGCTGAATATGTTGTTGTCAACTTAGATGGATCAAAACATCCCTTACCTCTGACAACAGTTTATCATAAATTACAACCCATAAATGCTTCTCCTTATACATTCTTGCAAGCTCTTTTTGGGCATGAGTATCCAGTTGGACTACTAGAGGAAGAGAAAATTCTTCCTGTGGGGAAGGATATCACAGCAGTTGGCCTTTGCAATTTAAGAAATGGAATTCCCGAAATTAAGTCATGTAAAGATCTACCATATTTTCTGTCGGAGTTGAGCAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACAAAAGTACTGTTTTGGGGTGGCATTGTTCTTGGTTCAGTCTCAATTGGGATTCTTGGCTATTCAGTCGCCAGGAACTGGAATAAGTGGAGGCAATGGAAAGAACAGAGGCAGCGAGAGCAACAAAGGCAAGCAGTTATTGATGAAGTTGATCCTCAACTGGATGAGCAAAATGAAGATGTTCCAGACGGACAGTTGTGTGTCATATGCCTGATGAGGAGACGGCGCTCAGTTTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTCGAACGCGAAGTGGCACCCAAGTGTCCTGTCTGTCGACAGGAAATTCGGGATTCGGTTCGGATTTTTGAATCCTGA 1155 0.4823 MSSHDQVLASLLSQIVLSFDGAVLGLALAYAAIRSIRNFTANSASLRKLRRAPSVSVSDLRSVLSDSDANSDDGRIVVVRGTVETKAAVDGSWKSLRPCTLVSRESGDKAVVLQITQTCIYNEWKGLFGWTSDLRAIFARSWRQPESKFLRKVPFVLVDVGRQPSAEYVVVNLDGSKHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLEEEKILPVGKDITAVGLCNLRNGIPEIKSCKDLPYFLSELSKDQMIVDLSFKTKVLFWGGIVLGSVSIGILGYSVARNWNKWRQWKEQRQREQQRQAVIDEVDPQLDEQNEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIFES 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91125g00001 384 Pfam E3 Ubiquitin ligase 139 284 IPR022170 GO:0004842|GO:0006996|GO:0016567
Stsc91125g00001 384 Pfam Zinc finger, C3HC4 type (RING finger) 330 377 - -
Stsc91125g00001 384 SUPERFAMILY RING/U-box 322 377 - -
Stsc91125g00001 384 ProSiteProfiles Zinc finger RING-type profile. 332 372 IPR001841 -
Stsc91125g00001 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 384 IPR044247 GO:0004842
Stsc91125g00001 384 CDD RING-HC_SPL2-like 327 373 - -
Stsc91125g00001 384 SMART ring_2 332 371 IPR001841 -
Stsc91125g00001 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91125g00001 Stsc-Chr91125 2643 6769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91125g00001 329 381 C3H Transcription Factor Family AT3G06140 39.623 1.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91125g00001 K15688 - gmx:100800058 600.512