Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91123g00006 ATGGCTGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATCAAGGGTTCTCTGAATGTTGAACTGTGTCAAAATAGTTTGGATATGAACATTGCAAGAATTTCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAAGGAGTTACAGTCATCTCGAATTTTCGCTAAGAATCAGTTTAGTAGTATTGCTTCTGAATATCGTGCTAAACACAATGCATTAGTTTATCCTAGATTGACCTCTAGCTTTTGTTTCCCGGGTGCTCTTCCTTTTGCTTCGATGAGCCCCGTGTTGAATTGCCGGACATATTCGTCGTCTTTCGGTGGCAAAGGAAGCAGGGATGATAATGGCACAGAAGTTGCTGCTGGTTCTGGTGCTGGTGATGTGAATTCTGGTGATGATTCTGTTGTTGCTGGCGATTTACCTGAGAAGATGAAAGATGCATGGAAGAGTGTGGTAGAGACAGCTAAACATGCTGGAGAAAAGGTTAAAGAAACCTCGGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCGCATCCGTATCTTAACAAGGTGGTTATTCCGGTTGGTAGTACATTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGTCCAATTTCTCTTATACCTGGAAGCACATCATGGGAAGCAGTTTCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATACTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACGTCGCAATATCTTGTGCCAGCTTGGAGGGGTGCAGCGGTTATTTCATTTGTATGGTTTTTGCATAGATGGAAGACAAATGTTTTTCATCGTACCCTGTCCAATCAAGGTTTGCTTGGACTTGACAGGGAGAAATTGCTTACTCTGGATAGACTCTCATCTGTTGGTCTTTTTATGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAGTCTATCGTAACTGTTGGTGGTATCGGAGGAGTTGCTACTGCTTTTGCCGCAAGAGACATTCTTGGCAATGTTTTCAGTGGTTTATCTATGCAGTTTTCCAGGCCCTTTTCAATAGGAGATACAATAAAAGCTGGCTCAGTTGAAGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCACTGCTGAGTACTGAGAAGTTTCCAGTCATAGTGCCAAACTCTTTTTTCTCTAGCCAGGTTATAGTGAACAAATCTCGTGCTGAATGCCGTGCCATTGTTAGCAAAATCCCTCTGCAAGTTGAGGATTTAAGTAAGATTCCCCAGTTATCTGAGGATATTAAGAGCATGCTAAGATCACATGCAAAGGTGTTCTTGGGAAAAGAGGTTCCTTACTGTTTCTTGTCACGAGTGGAAAGTTCATACGCAGAATTGACTGTTGGATACAACCTCAAACACATGCGAAAAGATGAGTTATTCGCCGCAGAACAAGATGTTCTCCTGAATGCAGTTCAGGTCATTAAGAATCACGGGGTAGCACTTGGCAGCACCTTACCAGGTTGA 1602 0.4245 MAAAVRFSHLKRLQSSIKGSLNVELCQNSLDMNIARISRLPSDSLSNVYYKKELQSSRIFAKNQFSSIASEYRAKHNALVYPRLTSSFCFPGALPFASMSPVLNCRTYSSSFGGKGSRDDNGTEVAAGSGAGDVNSGDDSVVAGDLPEKMKDAWKSVVETAKHAGEKVKETSDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWEAVSYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAVISFVWFLHRWKTNVFHRTLSNQGLLGLDREKLLTLDRLSSVGLFMIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSRPFSIGDTIKAGSVEGQVVEMGLTTTSLLSTEKFPVIVPNSFFSSQVIVNKSRAECRAIVSKIPLQVEDLSKIPQLSEDIKSMLRSHAKVFLGKEVPYCFLSRVESSYAELTVGYNLKHMRKDELFAAEQDVLLNAVQVIKNHGVALGSTLPG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91123g00006 533 Gene3D - 281 381 - -
Stsc91123g00006 533 Gene3D - 382 430 IPR023408 -
Stsc91123g00006 533 Pfam Mechanosensitive ion channel 325 526 IPR006685 GO:0016020|GO:0055085
Stsc91123g00006 533 SUPERFAMILY Sm-like ribonucleoproteins 366 431 IPR010920 -
Stsc91123g00006 533 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 280 365 IPR011014 GO:0016020
Stsc91123g00006 533 MobiDBLite consensus disorder prediction 112 138 - -
Stsc91123g00006 533 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 148 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91123g00006 Stsc-Chr91123 17581 21117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91123g00006 3 530 Mechanosensitive Ion Channel Family AT4G00290 56.061 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91123g00006 K22047 - gmx:100814954 765.377