Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91122g00005 ATGGCGGAAACTCCTCCTGCAGTGTTGCCTACTGGATACAGGTTCCACCCAACCGAAGAGGAACTTCTTACTTGCTACCTCAAAAACAAGATTGAGGGAAATGATTCACTCATCAACAACACCATTTCTCAGATTCATCTCTATAGCTTTGATCCTTGGGACTTGCCAGCACAATCGAAGGTTAAATCGGATGATTCAGAATGGTTTTTCTTCAATGAGTTGAAATACACAACGGAGAAGAATAGCAGGTGTGAGAGAAAAACTAATGGCGGATACTGGAAGATTACAGGGAAGGACCGTCAGATTAAGACAACAGGGACAGACAATGTCATAGGTACCAAAAAAACACTTGTTTTCTACAACAATCGGCCAGATAGTGTCAAGACAAATTGGGTTATGCACGAATATCATGCACTTAATCATCAGAATGTGGAGCGAGACTCTTAA 447 0.4161 MAETPPAVLPTGYRFHPTEEELLTCYLKNKIEGNDSLINNTISQIHLYSFDPWDLPAQSKVKSDDSEWFFFNELKYTTEKNSRCERKTNGGYWKITGKDRQIKTTGTDNVIGTKKTLVFYNNRPDSVKTNWVMHEYHALNHQNVERDS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91122g00005 148 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Stsc91122g00005 148 Gene3D NAC domain 18 148 IPR036093 GO:0003677|GO:0006355
Stsc91122g00005 148 SUPERFAMILY NAC domain 6 143 IPR036093 GO:0003677|GO:0006355
Stsc91122g00005 148 Coils Coil 139 148 - -
Stsc91122g00005 148 ProSiteProfiles NAC domain profile. 9 148 IPR003441 GO:0003677|GO:0006355
Stsc91122g00005 148 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91122g00005 Stsc-Chr91122 35911 38335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91122g00005 6 136 NAC Transcription Factor Family AT5G17260 51.515 2.85e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91122g00005 NAM 3.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91122g00005 - - aip:107626709 208.379