Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91122g00001 ATGGAGCTGATGGAAGAATCCACCAACAAAGGCTATTCTCAAGATTTGGAAGAAGAAGAGGAAGACGAGGAAGCACCGGGAGAAGAAACAACCACCACCGCCGTCTCTGCCGCTGTCGGGTTACACCATCATCAAGATGGAACAACATCAAATTACTTCAACCACACAACAAGAATGAATCAACCGCAACCTCCACAGAAACAACAGTTAGTTGATTTCATGGACTTGTCACTTGGGACAAACATCAACCACCATGAAGGCATCAACAATTTCCAAGCCACTGCCACCGCCACCGCAACCACCAACAACAATACTCCTAGTAACCACCAGCAGAGTCTACAACCACAAACTCAACCTCCGCCTCCGCCGCCGGAGAAAGAGCACATGTTCGATAAAGTAGTGACGCCGAGCGACGTCGGAAAACTGAACCGGCTGGTGATTCCAAAGCAGCATGCGGAGAAGTACTTCCCGCTGGATTCAACGTCTAACGAGAAGGGACTCCTCCTGAATTTCGAAGACCGGAACGGAAAATTGTGGCGGTTCAGATACTCTTACTGGAACAGCAGCCAGAGTTATGTGATGACGAAGGGTTGGAGCAGATTTGTGAAGGAGAAGAAGCTTGATGCAGGTGACATTGTTTCCTTCCAACGCGGTGTTGGAGAAAATTATAGACATAGGTTATACATAGATTGGAGAAGAAGACCTGATCACCATCACCATCACCATCATCTTCATGGAGGTGGAATAGGAGGAGTAGGAGTAGGAGGAGGACATGATTATCCTTCTTCTTCTTCCAATTTCATCACTCCCTTCTTCATTCCTAGTCAAGCTTCTTCACATTACTCTACAATCAGATATGGTGGCAGATTTTACTCTCTGCCACCGCAACAGCAACGGCAATTGATGATGCCACCACCAACAAGGAATCATCATCATTATCAGAGTTACAACAATAACGTTTATCCAATTCATCAGCAACATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGATATGGCTATAACAATAATCATCATCATCAAAACAATGAGTTGTTTTATCTGAGATCAACAGCAACAGCAGGTTCTCCTTCTTCTTCTTCTTCAATGTCAATAATTGATCATCATTATCACCATCAACAAGGATTATTGGCAAGACAACAACAACAACAAGAGCAAGAACAAGAGAGGGGTTCTCCAATGATCATTGATTCAGTACCAATTGCTCATCATTTTCATCAACAAGGAAAAAGGCTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCTTCATCAACACAAGTAGAAGATCAAGAACAAGAGCAAGAAGATCCAAAATGCTTCACCTTGTTCTCTTCTAACTCTTCTTCAAGGGATGCAGAAGAATCTGGAGACCAGAGAAGAATAAGGGAGCAAGCTGCAAATTTTTTTGATCTGGACCCTTCTTTGCAATTTCGCCAACAACACTGA 1476 0.4411 MELMEESTNKGYSQDLEEEEEDEEAPGEETTTTAVSAAVGLHHHQDGTTSNYFNHTTRMNQPQPPQKQQLVDFMDLSLGTNINHHEGINNFQATATATATTNNNTPSNHQQSLQPQTQPPPPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGENYRHRLYIDWRRRPDHHHHHHHLHGGGIGGVGVGGGHDYPSSSSNFITPFFIPSQASSHYSTIRYGGRFYSLPPQQQRQLMMPPPTRNHHHYQSYNNNVYPIHQQHGGGGGGGGGGGYGYNNNHHHQNNELFYLRSTATAGSPSSSSSMSIIDHHYHHQQGLLARQQQQQEQEQERGSPMIIDSVPIAHHFHQQGKRLRLFGVNMECASSSSSTQVEDQEQEQEDPKCFTLFSSNSSSRDAEESGDQRRIREQAANFFDLDPSLQFRQQH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91122g00001 491 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 436 IPR044800 GO:0003700
Stsc91122g00001 491 ProSiteProfiles B3 DNA-binding domain profile. 130 233 IPR003340 GO:0003677
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 433 470 - -
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 99 114 - -
Stsc91122g00001 491 SUPERFAMILY DNA-binding pseudobarrel domain 126 236 IPR015300 -
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 447 461 - -
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 1 66 - -
Stsc91122g00001 491 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc91122g00001 491 Pfam B3 DNA binding domain 130 234 IPR003340 GO:0003677
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 29 66 - -
Stsc91122g00001 491 MobiDBLite consensus disorder prediction 99 130 - -
Stsc91122g00001 491 FunFam B3 domain-containing protein 123 244 - -
Stsc91122g00001 491 SMART B3_2 130 235 IPR003340 GO:0003677
Stsc91122g00001 491 Gene3D - 124 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91122g00001 Stsc-Chr91122 9706 12081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91122g00001 125 431 RAV Transcription Factor Family AT2G46870 43.252 6.45e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91122g00001 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91122g00001 K09287 - gmx:100778733 351.673