Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91119g00003 ATGCCACGTGTTGACCTGTGGGTACAAGAGTTCTTAAAAAACGAGATACCTTGTGTTTCCGCTGACTACTTAGTCGAATATGTATGCAAACCATGTTCTTCACTTGAGAAACACGTATTATATGACACTCATGCTTGGGCAGAAAGTTCATTTTCCAAACTCAAGAATAGAGCAGAAGAGATCATTGATAGTGAAGTAGAATCAGTTAGTACTCCTGAAAGTAATGATATAGCTTGTGAAGTTTGTGGATCCAGGGATAGAGGGGAAGAGATGCTAATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACTCATATTGATTGTTGTGACCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCCCCAAATGCACTGATAAACAAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGGGGTTTCTCCAAGACTAAAAGTAAGTGA 462 0.4069 MPRVDLWVQEFLKNEIPCVSADYLVEYVCKPCSSLEKHVLYDTHAWAESSFSKLKNRAEEIIDSEVESVSTPESNDIACEVCGSRDRGEEMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCPKCTDKQNCSNSPKKRKKGGFSKTKSK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91119g00003 153 MobiDBLite consensus disorder prediction 131 153 - -
Stsc91119g00003 153 SMART PHD_3 78 130 IPR001965 -
Stsc91119g00003 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Stsc91119g00003 153 ProSiteProfiles Zinc finger PHD-type profile. 76 132 IPR019787 -
Stsc91119g00003 153 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 145 IPR044254 -
Stsc91119g00003 153 SUPERFAMILY FYVE/PHD zinc finger 65 137 IPR011011 -
Stsc91119g00003 153 Pfam PHD-finger 79 131 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91119g00003 Stsc-Chr91119 22148 23062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91119g00003 1 59 Core DNA Replication Machinery Family AT4G02110 64.407 3.67e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc91119g00003 PHD 1.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91119g00003 K10728 - gmx:100783461 227.254