Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91119g00002 ATGGAGGCTCCTAGAAAGTGGCGGCTGTTGAAAGAGCGAACTGGTCATGGTGCTTTCTATGGAATGCGCATTGTTGTGTATGGTGACTGCATAACTCCACCTTTGGATACTCTGAAGCGAGTGGTCAAAGCTGGAGATGGAACAATACTAGCTACATCTCCTCCTTACACACGCTTCCTTGGTACCGGAATTGATTATGCCATAGTTACTCCTGGTATGCCACGTGTTGACCTGTGGGTACAAGAGTTCTTAAAAAACGAGATACCTTGTGTTTCCGCTGACTACTTAGTCGAATATGTATGCAAACCATGTTCTTCACTTGAGAAACACGTATTATATGACACTCATGCTTGGGCAGAAAGTTCATTTTCCAAACTCAAGAATAGAGCAGAAGAGATCATTGATAGTGAAGTAGAATCAGTTAGTACTCCTGAAAGTAATGATATAGCTTGTGAAGTTTGTGGATCCAGGGATAGAGGGGAAGAGATGCTAATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACTCATATTGATTGTTGTGACCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCCCCAAATGCACTGATAAACAAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGGGGTTTCTCCAAGACTAAAAGTAAGTGA 678 0.4277 MEAPRKWRLLKERTGHGAFYGMRIVVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVTPGMPRVDLWVQEFLKNEIPCVSADYLVEYVCKPCSSLEKHVLYDTHAWAESSFSKLKNRAEEIIDSEVESVSTPESNDIACEVCGSRDRGEEMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCPKCTDKQNCSNSPKKRKKGGFSKTKSK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91119g00002 225 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 217 IPR044254 -
Stsc91119g00002 225 SMART BRCT_7 16 103 IPR001357 -
Stsc91119g00002 225 SMART PHD_3 150 202 IPR001965 -
Stsc91119g00002 225 Gene3D BRCT domain 15 134 IPR036420 -
Stsc91119g00002 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 224 IPR013083 -
Stsc91119g00002 225 SUPERFAMILY FYVE/PHD zinc finger 137 209 IPR011011 -
Stsc91119g00002 225 ProSiteProfiles Zinc finger PHD-type profile. 148 204 IPR019787 -
Stsc91119g00002 225 SUPERFAMILY BRCT domain 17 98 IPR036420 -
Stsc91119g00002 225 MobiDBLite consensus disorder prediction 202 225 - -
Stsc91119g00002 225 Pfam PHD-finger 151 203 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91119g00002 Stsc-Chr91119 21570 23062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91119g00002 1 131 Core DNA Replication Machinery Family AT4G02110 67.939 5.08e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc91119g00002 PHD 2.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91119g00002 K10728 - gmx:100783461 369.392