Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91118g00003 ATGGCATCGTCATCGTGGAACAACAGCAGCTACGACGTTCCGTGGGTTGAGAAGTACCGACCCTCCAAGGTCTCCGACATCGTCGGCAACCCCGACGCCGTCTCACGCCTTCAAGTCATCGCCCGTGACGGCAACATGCCCAACCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACTAGCATACTAGCACTCGCTCATGAGCTTCTCGGTTCCAATTCCAAGGAAGCAGTTCTCGAGCTCAACGCTTCCGACGACCGTGGAATTGACGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGACGAAGCCGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGAGGAGGACAATGGAGATATACTCGAATACTACTCGCTTCGCCCTCGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATCGTGCGATTTTCACGCTTGTCTGATGAGGAGATACTCGGTCGCCTCATGGTTGTGGTTCGAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATATAGTGGGTTCCAATTTGTTAACCAACAAAATGTTTTCAAGGTTTGCGACCAGCCGCATCCATTGCATGTGAAGAATATGGTGCGTAATGTTCTCGAAGGGAATTTTGATGAGGCTTGTTTGGGCCTCAAACAGCTATATGATTTAGGTTACTCCCCCACAGATATCATCACAACAATTTTCCGCATCATAAAAAATTATGATATGCCTGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGCTAAAGCTGCATGAGTAG 939 0.4782 MASSSWNNSSYDVPWVEKYRPSKVSDIVGNPDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEILGRLMVVVRAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMPEYLKLEFMKETGFAHMRICDGLKLHE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91118g00003 312 SUPERFAMILY post-AAA+ oligomerization domain-like 234 308 IPR008921 GO:0003677|GO:0006260
Stsc91118g00003 312 Gene3D - 171 234 - -
Stsc91118g00003 312 FunFam Replication factor C subunit 4 171 234 - -
Stsc91118g00003 312 Gene3D - 235 311 - -
Stsc91118g00003 312 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 14 306 - -
Stsc91118g00003 312 CDD AAA 28 165 - -
Stsc91118g00003 312 Gene3D - 7 170 IPR027417 -
Stsc91118g00003 312 FunFam Replication factor C subunit 4 7 170 - -
Stsc91118g00003 312 CDD HLD_clamp_RFC 170 232 - -
Stsc91118g00003 312 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524|GO:0016887
Stsc91118g00003 312 SMART AAA_5 45 177 IPR003593 GO:0016887
Stsc91118g00003 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Stsc91118g00003 312 Pfam Replication factor C C-terminal domain 235 308 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91118g00003 Stsc-Chr91118 24693 27494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91118g00003 11 308 Core DNA Replication Machinery Family AT1G63160 90.940 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91118g00003 K10755 - qsa:O6P43_034206 579.326