Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91118g00002 ATGGCGGCGACACCGTCGTCGAACCGTTCCCCTGACGACTTCACCGTCGATCCGACGCCTTTAATCGCAAATTCTAACGGCGGCGGCGGTGGAGCCACCTACGATGAATCGAACGCCGGCCGCAGATTCGTCCGGCGGCAGAGCCTCCGACAGGCTGCGCGGTTTCTTCGGCAGGGGAGCGGGCGTAGGTCGATGCGGGAGCCATCGATGGTGGTGAGGGAGACGGCGGCGGAGCAGCTGGAGGAGCGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTGCTCGACGTTCTCTGGAACTTCGCGTTCGTGGTGGCAGGCGCCACCGTTCTAGTCTTGAGCCGGAACGAGTCGCCGAACGCGCCGCTGAGGTTGTGGATCTTAGGGTACGCGGCGCAGTGCATTGTCCACGTGGCGTGCGTGTGCGTTGAGTATCGGAGGAGAAGGAGGAGGATGGAGCAGCAGCAGCAGCAGCTGAGCACCAACGACGTCGTTCAAGGCGTTGATGGAGTTGGTGTTGGGGGAAGTGGAGATTTGAGCTCCGGTTCCATGGAAGGTTCTGGACAGTTCTTGACATTGGCGCAATTCGATGAGGACGGCACAAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCCTTTATCTGGTGGGTTGTCGGGTTCTACTGGGTATCAGCTACTAATCAAGACTTAACCCAAGAGGCTCCTCTTCTTTACTGGTTATGTATAGTTTTCCTGGGTTTCGATGTTTTCTTTGTCGTTTTCTGCATTGCACTGGCATGTATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGCATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGGGCATCCAAAGAAGACATTGAGCACTTGTCGAAATTCAAATTCCAAAGGAATGAAAATAATGAGAAACTCGCTGATAATACACAAGGATCTGCTGGGGGAGTAATGATAGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTTCTGACGAAGATGCGGAATGTTGCATCTGCCTTTCTGCTTACGAGGATGGGGTTGATCTAAGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGTGGACAAATGGCTATACATCAATGCTACTTGCCCCCTCTGCAAGTATAACATCCTGAAAAGTAGCAGAAGTGCTCAAGAGGAAGTTTAG 1200 0.5258 MAATPSSNRSPDDFTVDPTPLIANSNGGGGGATYDESNAGRRFVRRQSLRQAARFLRQGSGRRSMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDVLWNFAFVVAGATVLVLSRNESPNAPLRLWILGYAAQCIVHVACVCVEYRRRRRRMEQQQQQLSTNDVVQGVDGVGVGGSGDLSSGSMEGSGQFLTLAQFDEDGTSMAKHLESANTMFSFIWWVVGFYWVSATNQDLTQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEHLSKFKFQRNENNEKLADNTQGSAGGVMIECRADSPIEHVLSDEDAECCICLSAYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSRSAQEEV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91118g00002 399 MobiDBLite consensus disorder prediction 1 37 - -
Stsc91118g00002 399 SMART ring_2 344 384 IPR001841 -
Stsc91118g00002 399 Pfam Ring finger domain 343 385 IPR001841 -
Stsc91118g00002 399 Coils Coil 143 163 - -
Stsc91118g00002 399 MobiDBLite consensus disorder prediction 1 22 - -
Stsc91118g00002 399 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Stsc91118g00002 399 FunFam E3 ubiquitin-protein ligase At1g12760 330 395 - -
Stsc91118g00002 399 CDD RING-H2_RNF6-like 343 385 - -
Stsc91118g00002 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 398 IPR013083 -
Stsc91118g00002 399 PANTHER TARGET OF ERK KINASE MPK-1 60 390 - -
Stsc91118g00002 399 SUPERFAMILY RING/U-box 334 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91118g00002 Stsc-Chr91118 13390 18233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91118g00002 45 392 C3H Transcription Factor Family AT1G68070 50.712 1.71e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91118g00002 - - ahf:112722254 718.383