LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91116g00004	ATGGAGCCTTTGGAAGTAGATCAAATTGTGGATATTCCTGATACTCCAGATAGATTACCTACCAGGCATGTTGATCAGAAACGTGTTCAGAATCCTGATAAGAGGGAGAGGGGCTTCCCTGCTGCTGATGAAATGAAGAAATTCAACAACTATATAGCACTTTCCCCATTAGAGACACGTCATCCATCTTATAATGCTCCTATCTTTAGAAAAGCTCAAACTGAGAAAACTGTCGGACTTGAGATAGCACACTCTATTGGTGCTGAAAAGATGGAGAGAGGGAAAACTTTGAGCTCTAGGTTTCCTGCTAAATCTTCTCATCATGGACCTAGGTCTGTTTTAGATTTTACTGAAGAGAATGCACACTCCCAACAGCTGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAAGGCTGTTGAAGATATGAAAGAACTAAAAGCAAACACTTCATCACGAGTTGATGCTGATTCTTTTACTGCCTTCAGAAGTAAAATGCTACCAGGTCCTAATATAACTCAGGATCGTGGCAAGGGAATTGCACTACCTAATGATTCTCAACCTCAACTAAACGCTGAAAAGCAACTGTCTTTGCCACCTCAAGTTTCCCCCACTCCAAGAGCTAGAGGGCAGAAGAGATTGGTACGGAATGGGTGTATTTCACCAGTTAATATTGCAAATATGGCAAACCAAGCAACTATAGAGGGTAATCACCAAACCAATGAAGTTGAAGAAATTAAAGCGGTGGATTTAGTTTCTAGCAATCCAATTTCTACGATTAATGTTGAAGATATAGTTGCTGAAGAGAGAGGCAGTAATAGAGTGAAGGGAAAGCAAGTGCTTATTCATCTTTCATCACATGGTCATAACACTGGAACTATTCGCATGGCTACCAGAAGCCCTGTGATTGATTTTGAAAAGGGCCATTCAGCCTGTAATGCTGTAAGGAATTCACTTAACTACTCTGGGGGACAAGATGGTTGGAGAACTACACATACTCATAACAGCACTGATCAGCATCCTTATGATTTAAATGAGCATAATTTACGCAGAAGCCGTGAGATTGGAAACTTTATTACCAGACATAATTTGAACAGAATTGATAGAAGAAACACTCGCAGCGGTGAAAGCAGCAAGCATGCACAAGATTCTTTATCGGATGATGCAGCTCAAGCAACTTCACTTACCATTCCAGAAGTAGATGAGTTGACTGTAACTCATCCTACCACAGGCACACTGACTAAAAGGCAAAAGAAACGTGGATCAACTTCAGCAAATCGTGATATGATATTCCTAAGTTCATCTGGGGAATCATCAAGCTCTTCTCGTAGCCCTGTCTTGAATTCTAAAGTGGTAGACTTGTCACTAGAACCTAGTTATACCAACAGATTTACTGAAATCCTAGATGGCAATGACAATAGTAACTCAGATGCTCGAGCAAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTATATCATGATGATATTGTTGAAGGGAGAGGGCAGATTGATGAACATTTAGCTTGGGCACTGCAGCAAGAGGAGAATCTTGATAATCACCAAACATCAAATCCAATATGGGTTCCAAGGTCAGCAAATAGTCAACCTCGTTCACGGTCCCATCAAAATCCTTCTAATAGGAGGAGAGCTCCACCTCAAGTTCCTTCATCTAATAGAATGTCCCAGTTGAGGTCACAGTTGAGGAGTCGCGTAGCAAATCGTTCCCGAACACCTAACATATCATACAGAGGAAGGCGCCCTCGGTTTCCCGTGGATATGGACTTAAACCTGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATGTTTCTTGCTCAGCATGATTTCAATGAACATGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAATCATCGACATACTGGTGCATCCTCGAATCAGATCAATAGTTTGCCAGAGTCCACCATCCAGAACGACAACTTCACAGAGGCATGTGCTATATGCCTTGAGACCCCAGGCAAGGGTGAAATAATTCGCCATCTTCCCTGCTTGCACAAATTCCACAAAGATTGTATTGATCCTTGGCTCCGTAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA	2169	0.4195	MEPLEVDQIVDIPDTPDRLPTRHVDQKRVQNPDKRERGFPAADEMKKFNNYIALSPLETRHPSYNAPIFRKAQTEKTVGLEIAHSIGAEKMERGKTLSSRFPAKSSHHGPRSVLDFTEENAHSQQLKPAFSHRGSRDKAVEDMKELKANTSSRVDADSFTAFRSKMLPGPNITQDRGKGIALPNDSQPQLNAEKQLSLPPQVSPTPRARGQKRLVRNGCISPVNIANMANQATIEGNHQTNEVEEIKAVDLVSSNPISTINVEDIVAEERGSNRVKGKQVLIHLSSHGHNTGTIRMATRSPVIDFEKGHSACNAVRNSLNYSGGQDGWRTTHTHNSTDQHPYDLNEHNLRRSREIGNFITRHNLNRIDRRNTRSGESSKHAQDSLSDDAAQATSLTIPEVDELTVTHPTTGTLTKRQKKRGSTSANRDMIFLSSSGESSSSSRSPVLNSKVVDLSLEPSYTNRFTEILDGNDNSNSDARARQVEADERLARELQEQLYHDDIVEGRGQIDEHLAWALQQEENLDNHQTSNPIWVPRSANSQPRSRSHQNPSNRRRAPPQVPSSNRMSQLRSQLRSRVANRSRTPNISYRGRRPRFPVDMDLNLRLDILEALEDAVGDFADLGMGNDMFLAQHDFNEHDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFTEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	526	590	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	93	112	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	16	39	-	-
	Stsc91116g00004	722	FunFam	RING/U-box superfamily protein	642	722	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	526	586	-	-
	Stsc91116g00004	722	SMART	ring_2	677	717	IPR001841	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	1	39	-	-
	Stsc91116g00004	722	CDD	RING-H2_PA-TM-RING	677	718	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	165	186	-	-
	Stsc91116g00004	722	ProSiteProfiles	Zinc finger RING-type profile.	677	718	IPR001841	-
	Stsc91116g00004	722	PANTHER	SI:CH211-59O9.10	349	722	-	-
	Stsc91116g00004	722	SMART	ringv_2	676	718	IPR011016	GO:0008270
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	366	383	-	-
	Stsc91116g00004	722	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	643	722	IPR013083	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	384	427	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	366	427	-	-
	Stsc91116g00004	722	MobiDBLite	consensus disorder prediction	326	345	-	-
	Stsc91116g00004	722	Pfam	Ring finger domain	676	718	IPR001841	-
	Stsc91116g00004	722	SUPERFAMILY	RING/U-box	676	721	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91116g00004	Stsc-Chr91116	25998	35338	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91116g00004	1	722	C3H Transcription Factor Family	AT1G04790	32.723	2.48e-81	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91116g00004	-		-	aprc:113872307	802.742