Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc910g00003 ATGGATGAAAGGTCAAGAAATGAGGTATCTCCTCATCATCATCATCACCATCTCATGAAACTTGAACTGAGGCTTGCTCCACCTGGTGCTGATGAACAACAACAACAGCAACACTGGTCTTTAATCAATGGCATCAGAACAACAACAACAAAGAGAGATGAGTCTTCTTCTTCTGTGCTATCTCTTGGTTACTTCCCTCATCATCATCATCATGCAACCACAAAAGCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCACAACCCTTGCAGAATAATAATAATAATGCAGACAAGAAAGTTTTCTCACCCTCTTCTGCAAATACACCTCTTCCCAATAACATTTCTCAGAAAAGAACTGCTCCAGGTCCAGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACCTTGCAAGTAGCAGTTCTTCAAAGCCACCTCCTCCTCCTCCTGACCACCATAACAAGGTGGCTGCTGCTGCTGCTTTGGACAAGAACAACAACAGCAGCTATGGTGGTGGGAAAGGCATGTTTGTGAAGATCAACATGGATGGTGTTCCCATTGGTAGGAAAGTTGACCTCAATGCTTATGATAGCTATGAAAATCTCTCCAATGCTGTGGACCAACTCTTCAGAGGCCTCCTTGCTGCTCAAAGAGATTCTTCTGGTGGTGGAGTTAACAAGCTACAAGAGGAAGAGAAAGTGATAACAGGATTATTAGATGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCCTGGCACATGTTCGTATCAACAGTGAAGAGGCTGAGAGTGTTGAAGAGTTCTGAGCTTTCTGCCTTTACCCTTGGTGGTAATAAGCAAGACAAAGATGCAACTTGA 894 0.4407 MDERSRNEVSPHHHHHHLMKLELRLAPPGADEQQQQQHWSLINGIRTTTTKRDESSSSVLSLGYFPHHHHHATTKASPSPSPPPPPQPLQNNNNNADKKVFSPSSANTPLPNNISQKRTAPGPVVGWPPIRSFRKNLASSSSSKPPPPPPDHHNKVAAAAALDKNNNSSYGGGKGMFVKINMDGVPIGRKVDLNAYDSYENLSNAVDQLFRGLLAAQRDSSGGGVNKLQEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGGNKQDKDAT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc910g00003 297 Gene3D - 171 290 - -
Stsc910g00003 297 ProSiteProfiles PB1 domain profile. 175 279 IPR000270 GO:0005515
Stsc910g00003 297 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 282 IPR003311 GO:0005634|GO:0006355
Stsc910g00003 297 MobiDBLite consensus disorder prediction 69 130 - -
Stsc910g00003 297 MobiDBLite consensus disorder prediction 135 154 - -
Stsc910g00003 297 SUPERFAMILY CAD & PB1 domains 165 276 - -
Stsc910g00003 297 MobiDBLite consensus disorder prediction 91 119 - -
Stsc910g00003 297 FunFam Auxin-responsive protein 172 291 - -
Stsc910g00003 297 Pfam AUX/IAA family 21 284 IPR033389 -
Stsc910g00003 297 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc910g00003 Stsc-Chr910 13116 16019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc910g00003 179 288 B3 DNA Binding Superfamily AT4G23980 34.545 1.05e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc910g00003 AUX_IAA 3.4e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc910g00003 K14484 - gmx:100804593 322.783