Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc910g00002 ATGGGAAAAGCTAGCAGGTGGTTGAAAGGGTTATTGGGAATGAAGAAGGAGAAGGACAGCTATGACAATTCTGCCTCAATGGCTGCTGCTTCTACTGACAAGAAGGAGAAGAAACGTTGGAGTTTTACAAAGTCTGCAAAAGATGATGCTAGGATCAGATCTTATGCTGCTGAAAAAGGCAATGAGCAGAACAAGAATGCCATTGCCAATGCTGCCATGGAAGTTGTGAGACTAACAAGCCATGGAAGAGGAACATTGTTTAGTGGAAGCATGGAGAGATGGTCTGCATTGAAGATCCAATCTTATTTCAGAGGTTACTTGGCTAGGAGGGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAAGCTCTAGTTAGAGGCTATCTAGTTAGGAAAAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTGATAAGAGCTCAGATCGCGGCGAGAGCTCGCCGTTTCGTTAGCAATGCCAATAGATTTCAATCTCAAACCCCTTCAAGAAGATATGTGCAATGGTATGATGAAACATCCTTAATGAATATGAAAGGATTTGATGAGAGCCCCAAGAATGTTGAAATTGATACATATAGGCCTCAATCAAGATCAAGGAGGATCACAACAACTGTGTCTGAGACTGAAGAAGAAGATCACATGCACTATCAAGCAATCTCAGTTCTTGAATGCAGGCATCCTCCTCCTCCTCCTCAGCATTTGGAATGGTACTTGAACACCGGCGAATGTGATATCGCGACAGCTCACAGCACGCCTCGTTTGGTAAACGCTCCGGCTACACCGGTGAAGAGTGCTTGTGGAGAGTCCTTTAGGCCTTACTGCAATTCCCCTAACTATATGGCCAATACTCAGTCATATAGGGCAAAGGTTAGGTCTCATAGTGCTCCAAAGCAAAGGCCTGAGCCCAAGAAGAGGCTTTCACTCACTGAGATAATGGCAGCAAGAAATAGCACTAGTGGTGTTAGAATGCATTGGTCATCCAGATCACAGTCTCAAGATTATTGCAGTTTTGACACAGTTGAGAGGAAATTGAGATAG 1059 0.4429 MGKASRWLKGLLGMKKEKDSYDNSASMAAASTDKKEKKRWSFTKSAKDDARIRSYAAEKGNEQNKNAIANAAMEVVRLTSHGRGTLFSGSMERWSALKIQSYFRGYLARRALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQIAARARRFVSNANRFQSQTPSRRYVQWYDETSLMNMKGFDESPKNVEIDTYRPQSRSRRITTTVSETEEEDHMHYQAISVLECRHPPPPPQHLEWYLNTGECDIATAHSTPRLVNAPATPVKSACGESFRPYCNSPNYMANTQSYRAKVRSHSAPKQRPEPKKRLSLTEIMAARNSTSGVRMHWSSRSQSQDYCSFDTVERKLR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc910g00002 352 PANTHER IQ-DOMAIN 5-RELATED 1 324 - -
Stsc910g00002 352 Gene3D - 91 143 - -
Stsc910g00002 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 134 IPR027417 -
Stsc910g00002 352 SMART iq_5 91 113 IPR000048 GO:0005515
Stsc910g00002 352 SMART iq_5 114 135 IPR000048 GO:0005515
Stsc910g00002 352 Pfam IQ calmodulin-binding motif 119 133 IPR000048 GO:0005515
Stsc910g00002 352 Pfam IQ calmodulin-binding motif 93 113 IPR000048 GO:0005515
Stsc910g00002 352 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Stsc910g00002 352 Pfam Protein of unknown function (DUF4005) 259 327 IPR025064 -
Stsc910g00002 352 MobiDBLite consensus disorder prediction 20 41 - -
Stsc910g00002 352 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc910g00002 Stsc-Chr910 7017 8323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc910g00002 1 330 IQD Protein Family AT3G16490 45.845 5.41e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc910g00002 - - gmx:100797686 359.377