Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91095g00004 ATGATGATTTTTGTGTCCCAGTATTGTTACGATAGTAGCAAAGCCAACATCTCTGCAATTAGCAACAATCACACGCTCTCAAGCATTCCTTCTTTCACAATTTCTAGCAAAGACAACAAGTTCATAAGCGTCGGCTGCGATACGTACGGCTACCTTAATAGCTTCTACGACGAAGATACCGCCGGTTACTCGACCGGGTGCTTAACGAGATGCTATGGCAACACAATGGAGATCAAGAACGGGGATTGTTCCGGCATCGGGTGCTGCCAGGTGGATATTCCCCCGGGAATGAGCAAGGTGTCAACTCAAGTTGGTACCTTTGAGAATTTCAGGACATCTCTTTCCTTCAACAACTGTAGCTATTCTTTTGTTGTCAAGAATGGCAACTACACGTTTTCCAAGGACCACTTGGAGAATCTACCATATGAGAGGCTCCCTGTGGTGTTCAATTGGAGTGTTGGGAGCCAGACATGTGAAGAATCTTTGACCACTGCTTGCAAGGGAAATAGTCATTGTGTGAATTCATTATCGGACACTACCACTACTGGATATGGTTATCGGTGTCAATGCAACCGAGGTTTTGAAGGAAACCCATATCTTCACGGTTGCACAGACATTGATGAATGTAATACGGGACTGCATACATGTGCAACTCACTCTAACTGTCGCAATACAAATGGATCCTACCAATGCTTTTGTCCTAACGGCCAATCAGGAAATGGATCAAAAGAAGAAGGGTGCCATAAGAAAGATTTCCTTCTACAAATTGTCATTGGTGCAAGTGCAGGATCCATAGCTATTTTTGTGGGGACTTCTTTGCTATACTTAACATACCAAAAGAGAAAACTCATGAAACTAAAAGAGAAGTTCTTCAAGCAAAATGGTGGCCTTCTTTTGCTACAACAACTCTCTACAAGAGAAGAGTCCTCCCATAATACCCAAATTTTCACCTCCGATGAATTGATGAAAGCCACCAACAACTTCGACGAGAATCTAATCGTTGGCAGGGGAGGTTACGGCACAGTTTACAAAGGAGTTCTAGAGAATGACACAGTTGTTGCTATCAAGAAGTCCAAAATAGTTGACCCTGACCAAGTTCAACAGTTCATCAACGAGGTGATTGTTTTGTCCCAAATTAACCACAGAAATGTGGTGAAGCTTTTGGGTTGTTGTTTAGAAACAGAAGTCCCTCTATTAGTCTATGAGTTTGTAAGAAATGGAACACTTTTCGATTTCATCCATGACGAAAACAAGAGAAAACGTTTCGATTGGAAGAATCGATTAAGAATCGCAGCAGAGGCAGCCGGAGCTTTATCATATCTTCACTCAGCTGCTTCCATACCAATTGTCCATAGAGATGTTAAGAGTGCCAACATTCTATTAGATGAAGATTACACTGCAAAAGTCTCTGATTTTGGAGCTTCAAGATTCGTTCCGGGGGACGAAATTGCATTGGCTACAATGGTGCAAGGGACTATTGGTTACTTGGATCCAGAGTACATGCAGAGTAGCCAACTAACTGAGAAAAGTGACGTGTATAGCTTCGGTGTGGTGCTCGCGGAGCTTCTTACAGGAAAGAAACCTTTTTCGTTTGAGAAGTACCCGGAAAAGAAAACAAATCTTGCTGCTTACTTGCTGTCTTGCCTGAGAGAGGATTGCTTGGTGGAAGCTCTTGAAGATGGAATGTTGAATGAAGAAAATAAGCAAGAGATTGTGGAAGTTGCTGTTGTTGCATCAAAGTGTTTGAGAGTTAGAGGGGAAGAAAGACCAAGCATGAAGGAAGTGGCGATGGAATTGGAGGGAATAAGGGTAATGTCAAAGCACCACTGGGTTAATAATAATGGTAACAAGAATTTTGAAGAGACTCAATACTTGCTTCCTAAATCATCATGGTCAGAAACTTATGAGCATGGTGATAGCAGTAGCAGTAGTCATCAAAATACAAAATATGATAGCATCATCAGGGATCAGGAAGATCTTATTGTCTTAGAAAATGGAAGATGA 2004 0.4192 MMIFVSQYCYDSSKANISAISNNHTLSSIPSFTISSKDNKFISVGCDTYGYLNSFYDEDTAGYSTGCLTRCYGNTMEIKNGDCSGIGCCQVDIPPGMSKVSTQVGTFENFRTSLSFNNCSYSFVVKNGNYTFSKDHLENLPYERLPVVFNWSVGSQTCEESLTTACKGNSHCVNSLSDTTTTGYGYRCQCNRGFEGNPYLHGCTDIDECNTGLHTCATHSNCRNTNGSYQCFCPNGQSGNGSKEEGCHKKDFLLQIVIGASAGSIAIFVGTSLLYLTYQKRKLMKLKEKFFKQNGGLLLLQQLSTREESSHNTQIFTSDELMKATNNFDENLIVGRGGYGTVYKGVLENDTVVAIKKSKIVDPDQVQQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVRNGTLFDFIHDENKRKRFDWKNRLRIAAEAAGALSYLHSAASIPIVHRDVKSANILLDEDYTAKVSDFGASRFVPGDEIALATMVQGTIGYLDPEYMQSSQLTEKSDVYSFGVVLAELLTGKKPFSFEKYPEKKTNLAAYLLSCLREDCLVEALEDGMLNEENKQEIVEVAVVASKCLRVRGEERPSMKEVAMELEGIRVMSKHHWVNNNGNKNFEETQYLLPKSSWSETYEHGDSSSSSHQNTKYDSIIRDQEDLIVLENGR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91095g00004 667 SUPERFAMILY Protein kinase-like (PK-like) 313 613 IPR011009 -
Stsc91095g00004 667 ProSitePatterns EGF-like domain signature 2. 188 203 IPR000742 -
Stsc91095g00004 667 SMART egfca_6 205 248 IPR001881 GO:0005509
Stsc91095g00004 667 FunFam Wall-associated receptor kinase 2 404 622 - -
Stsc91095g00004 667 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 222 233 IPR000152 -
Stsc91095g00004 667 ProSitePatterns Calcium-binding EGF-like domain signature. 205 231 IPR018097 GO:0005509
Stsc91095g00004 667 ProSiteProfiles EGF-like domain profile. 205 243 IPR000742 -
Stsc91095g00004 667 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Stsc91095g00004 667 Pfam Protein kinase domain 332 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91095g00004 667 Pfam Calcium-binding EGF domain 205 247 IPR001881 GO:0005509
Stsc91095g00004 667 Gene3D Transferase(Phosphotransferase) domain 1 404 624 - -
Stsc91095g00004 667 Gene3D Laminin 155 247 - -
Stsc91095g00004 667 FunFam Wall-associated receptor kinase 2 298 403 - -
Stsc91095g00004 667 CDD STKc_IRAK 334 602 - -
Stsc91095g00004 667 CDD EGF_CA 205 239 - -
Stsc91095g00004 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 612 IPR045274 GO:0007166
Stsc91095g00004 667 SUPERFAMILY EGF/Laminin 205 240 - -
Stsc91095g00004 667 ProSiteProfiles Protein kinase domain profile. 328 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91095g00004 667 Gene3D Phosphorylase Kinase; domain 1 297 403 - -
Stsc91095g00004 667 SMART serkin_6 328 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91095g00004 667 SMART egf_5 157 204 IPR000742 -
Stsc91095g00004 667 SMART egf_5 208 248 IPR000742 -
Stsc91095g00004 667 FunFam Fibrillin 2 200 245 - -
Stsc91095g00004 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91095g00004 Stsc-Chr91095 13563 16648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91095g00004 36 653 Receptor kinase-like Gene Family AT1G21230 48.031 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc91095g00004 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91095g00004 - - gmx:100779983 806.594