Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91081g00002 ATGACCATGATGAAGCTCTTTAGCATTGTAGTATTGTCCTTATCTTTCTTCACAGTTATGGGGCAGCTACCTTCCCAGGACATTTTGGCCTTGTTGGAGTTCAAGAAAGGCATCAAGCATGACCCTACTGGTTATGTCCTCAATTCATGGAATGAGGAATCCATTGACTTTGATGGATGCCCTTCTTCATGGAATGGAGTTCTTTGTAATGCTGGTAATGTTGCTGGGGTTGTCCTTGATAATCTAGGCCTCTCTGCTGATGCTGACTTAAGTGTGTTTTCAAATCTCACAAAGCTTGTCAGGCTCTCCATGTCCAATAACTCGATTTCAGGAAAACTACCTGGCAACATTGGTGATTTAAAGAGCCTTGAGTTCCTGGATATCTCCAATAACCTCTTTTCTTCGTCGCTGCCGGCAGGAGTTGGCAGCTTAGGTAGCTTGCAGAATATGTCCTTGGCTGGGAATAACTTCTCTGGCTCGATACCTGACTTGATTTCGGCGATGGCATCCCTCCAGTCTTTGGACCTGAGCAGAAACTCCTTTTCTGGAGGGCTGCCAGTATCCTTGACTAAACTGGCTAACTTGGTATCTCTTAACTTGTCTCATAATGGCTTCACTGGGAAAATTCCCAAAGGTTTTGAGCAGATGTCCACTCTCGAAAAGCTTGACTTGCATGCAAATATGCTTGATGGTCATTTGGATGTTGAATTTATGCTTTTATCAAGTGCCAGCTATGTTGATTTCAGTGAGAATATGCTAGAGAGTGCTAATTCTGAGAAGTTTCTACAACGAATATCTGAAAGTATTAAGCATCTGAATCTAAGCCACAACCGGTTTACCGGGTCATTGGATGGTGGAGCTGAGCTACCGGTTTTCGAAAACGTGAAGGTGTTGGACCTAAGCTACAATCAATTGGATGGAGAATTGCCAGGATTTGATTTTGTTTATGATCTTGAGGTCCTTAAGCTTAGCAACAACAGATTTTCAGGGTTCATTCCTAATGGCCTTCTAAAAGGAGACTCTTTGGTTTTAACTGAACTAGATTTGAGTGCCAACAATCTCTCAGGGACACTAGGTATAATTACATCAACAACACTGCACTATCTTAATCTCTCATCAAATGGCTTCAGTGGAAATTTAACCAGGATGTTGAAATGGGGGAATCTAGAATATGTTGATCTAAGTGGGAACCGTTTGACAGGGAACATACCTGAGGCAACTCCTCAATTTTTGAGGTTAAATTATTTTAATCTGTCCCACAATTCTCTTAGCAGCTCCCTTCCAAGAGTCTTAATTCAGTATCCAAAGCTTAGAGTGCTTGATATTAGTTCAAACCAAATTGATGGAGCACTTCAAGCCGAATTGCTCACAATACCAACTTTGCAAGAGCTCCATCTTGAAAATAATATGATCACTGGTGGTGTTAGTTTCTCGTCTTCTCCCGGTCAATCCGATCTTCAGATTCTTGATCTTTCTCATAACAAGTTTAATGGCTATTTTCCAGATGAGTTTTGGTCTCTAAATGGCCTTAAAGTGCTCAATATTGCTGTAAATAACTTTTCTGGTTCTCTTCCAACTGCCATTGCTGACATGAGTTCACTATATTCCTTGGACATATCAGAGAATCATTTTACCGGGCCTCTGCCGAATAACATCCCAAAGGAGCTCATAAACTTCAATGCTTCACTGAATGATTTCTCTGGAGTTGTCCCAGAAAGTCTTAGGAAATTCCCAAGTTCATCTTTCTTTCCTGGGAATTCCAAGTTACATCTTCCTACTAGCCTTCCTGGATCAACCACTCCACCAGCTGAAAGTTCCAAGAAGAAGTCCATGAGCACCATTGTTAAAGTAATAATCATAGTGTCATGTGTTGTTGCACTCTTCATATTGATCTTGCTTGCAGTCTTCATTCTCTACATACGAAAGTCAAGATCCCAACCGGAATATGAAACAAGTAAGGATATCCGAGCTCGTCCACAACCAGTCAGCTCGGCCCCGGTTCGGACAACAGACAGGGGTGGTCCTTTGGTTGTATCAGCTGAGGACCTTGTGACATCCCGTAAAGAGTCACCATCAGAGATAATCAGCCCGGATGAAAAATCAGCAGCTGTAACTGGGTTCTCCCCATCAAAACAAAGCCACTTTTCTTGGTCACCGGAGTCTGGTGATTCATACACTGCTGAAAATCTTGCTAGACTGGATACAAGATCACCGGATAGGCTGGTCGGAGAGCTGCATTTTCTTGATGATACAATATCTTTGACACCTGAAGAGCTCTCTCGGGCCCCGGCTGAAGTTTTGGGGAGGAGTAGTCATGGCACTTCTTACAAGGCAACTTTGGAGAACGGCTTGTTCTTGAGAGTGAAGTGGCTACGAGAAGGAGTGGCAAAACAAAGAAAGGAATTTGTTAGAGAGATAAAGAAATTTGCAAACATAAGGCATCCAAATGTTGTGGGATTGAGAGGATACTATTGGGGTCCTACGCAGCACGAGAAACTCATTCTTTCGGATTACATCTCTCCGGGAAGTCTTGCAAGCTTTCTTTATGATCGACCGGGAAGAAAAGGTCCGCCATTAACTTGGGTTCAGAGGCTCAAGATTGCAGTTGATGTAGCACGTGGTCTGAACTATCTCCATTTTGATCGCGCTGTTCCTCACGGGAACCTAAAGGCCACAAATGTCTTGTTAGATACTGGTGATATGAATGCTCGTGTTGCTGATTATTGCCTTCACCGGCTTATGACACAGGCCGGTACTGTTGAACAGATTCTTGATGCTGGTGTCTTAGGCTACCGTGCACCTGAGTTAGCTGCTTCCAAGAAGCCAATGCCATCCTTCAAATCAGATGTTTATGCTTTTGGAGTGATACTCTTGGAGCTTCTAACTGGAAGGTGTGCTGGTGATGTGATTTCGGGCGAGGAGGGAGGTGTTGATTTGACAGATTGGGTGAGGTTGCGTGTATCTGAAGGTAGAGGCTCGGATTGTTTCGATGCTACCTTGATGCCGGAGCTGAGCAATCCGGTTGCGGATAAGGGAATGAAGGAGGTCCTAGGAATAGCTATCAGATGCATCCGATACGTTTCGGAGAGGCCAGGCATCAAGACTATATATGAAGAGCTTTCTTCTGTATGA 3132 0.4355 MTMMKLFSIVVLSLSFFTVMGQLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNAGNVAGVVLDNLGLSADADLSVFSNLTKLVRLSMSNNSISGKLPGNIGDLKSLEFLDISNNLFSSSLPAGVGSLGSLQNMSLAGNNFSGSIPDLISAMASLQSLDLSRNSFSGGLPVSLTKLANLVSLNLSHNGFTGKIPKGFEQMSTLEKLDLHANMLDGHLDVEFMLLSSASYVDFSENMLESANSEKFLQRISESIKHLNLSHNRFTGSLDGGAELPVFENVKVLDLSYNQLDGELPGFDFVYDLEVLKLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGTLGIITSTTLHYLNLSSNGFSGNLTRMLKWGNLEYVDLSGNRLTGNIPEATPQFLRLNYFNLSHNSLSSSLPRVLIQYPKLRVLDISSNQIDGALQAELLTIPTLQELHLENNMITGGVSFSSSPGQSDLQILDLSHNKFNGYFPDEFWSLNGLKVLNIAVNNFSGSLPTAIADMSSLYSLDISENHFTGPLPNNIPKELINFNASLNDFSGVVPESLRKFPSSSFFPGNSKLHLPTSLPGSTTPPAESSKKKSMSTIVKVIIIVSCVVALFILILLAVFILYIRKSRSQPEYETSKDIRARPQPVSSAPVRTTDRGGPLVVSAEDLVTSRKESPSEIISPDEKSAAVTGFSPSKQSHFSWSPESGDSYTAENLARLDTRSPDRLVGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATLENGLFLRVKWLREGVAKQRKEFVREIKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWVQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTGDMNARVADYCLHRLMTQAGTVEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISGEEGGVDLTDWVRLRVSEGRGSDCFDATLMPELSNPVADKGMKEVLGIAIRCIRYVSERPGIKTIYEELSSV 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91081g00002 1043 SMART LRR_typ_2 192 215 IPR003591 -
Stsc91081g00002 1043 SMART LRR_typ_2 315 339 IPR003591 -
Stsc91081g00002 1043 SMART LRR_typ_2 168 191 IPR003591 -
Stsc91081g00002 1043 SMART LRR_typ_2 96 119 IPR003591 -
Stsc91081g00002 1043 SMART LRR_typ_2 120 144 IPR003591 -
Stsc91081g00002 1043 SUPERFAMILY Protein kinase-like (PK-like) 764 1039 IPR011009 -
Stsc91081g00002 1043 PANTHER OS07G0626500 PROTEIN 372 1043 - -
Stsc91081g00002 1043 FunFam Pollen receptor-like kinase 1 839 1043 - -
Stsc91081g00002 1043 Pfam Protein tyrosine and serine/threonine kinase 765 962 IPR001245 GO:0004672|GO:0006468
Stsc91081g00002 1043 MobiDBLite consensus disorder prediction 649 671 - -
Stsc91081g00002 1043 SUPERFAMILY RNI-like 80 565 - -
Stsc91081g00002 1043 Gene3D Ribonuclease Inhibitor 363 480 IPR032675 -
Stsc91081g00002 1043 Gene3D Ribonuclease Inhibitor 481 594 IPR032675 -
Stsc91081g00002 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 360 599 - -
Stsc91081g00002 1043 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Stsc91081g00002 1043 Pfam Leucine rich repeat 459 519 IPR001611 GO:0005515
Stsc91081g00002 1043 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Stsc91081g00002 1043 Gene3D Transferase(Phosphotransferase) domain 1 840 1043 - -
Stsc91081g00002 1043 SUPERFAMILY Outer arm dynein light chain 1 194 333 - -
Stsc91081g00002 1043 ProSiteProfiles Protein kinase domain profile. 761 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91081g00002 1043 Gene3D Ribonuclease Inhibitor 25 140 IPR032675 -
Stsc91081g00002 1043 Pfam Leucine rich repeat N-terminal domain 25 70 IPR013210 -
Stsc91081g00002 1043 Gene3D Ribonuclease Inhibitor 141 362 IPR032675 -
Stsc91081g00002 1043 FunFam Leucine-rich repeat receptor-like protein kinase 746 838 - -
Stsc91081g00002 1043 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 23 266 - -
Stsc91081g00002 1043 Gene3D Phosphorylase Kinase; domain 1 752 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91081g00002 Stsc-Chr91081 15368 19285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91081g00002 27 991 Receptor kinase-like Gene Family AT4G36180 28.078 2.34e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc91081g00002 PK_Tyr_Ser-Thr 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91081g00002 - - gmx:100793639 1714.89