Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91077g00003 ATGGGGGAACATTCCGTATCAGAAGCAAAAGAAGGAGGGGGAGGAGTCTTCCAGAATGTTCTGCCTCCTTCCAAAAACGACGACATCGTATTGCTCAACGGCAAGCCAGTCATCGTCGCCCAGCCCCTCACAGTTGTCCGCTCCCTCACCAGTACCCGTGTCCTTGCACCTCATAACTCTTCCGACTCGCTGAGTCAACCCGGACGAGTCGAAGCAACCACCGGAAACAACGCGAATGAGGAAAACTCGCAAGAGCAAGAAACAGAGCCGAAACGCGTTTCTTCTGAGATTCAAGAAAAACCGCGTTTCGTGGACGACGGAGATTCTCAATCGGAGGTGGTGATGGAAACGCAGGTGCAGCAAGAGCCCAATGGAGAAGGTAAACGCTCTACGTTGTCGTTCGAGGAGTTTCTACAGGCTACGAACACGAAAGTTGCGTCGGAAGAGGAGGCTCTGAAACCGGTTGCTGAGAGCGTTGTTGTTCGCGTGAAGGAGGAACCAGTGGTGGCGGATGATGATGAGGTGGCGATTCTTAGGGTGAAACAAACGCCGAAGGTTGAAGTGAAGAAGGAGAAGGTTGAAGAGAGGATTCCGGGACTGGAAGACGGTGAATTTGATGTGCCCCAAGGGTGGTTGCTGATGGGAAGAAAGGTGGAGATTGCAATTTCAATGGCGAAAGGAGTGCGGCGATTGGTAGATAATGAGATCGTCCACTTTGATTTCCCTCGAGCTACTTCGTCTCGCAAGTTTCAACCCATCGTTCGCATCTCAACTAGGCGTTCTGGAGGGGTTGGGAGGCTTCCAATGGAGTGGGCAAGGACTGTAGTTCCTCTTGTGCAATCCGGGTTTGTTCAGGTTCGAGGTCGATGCATAGCTGTACCGCATAACCTTCAAATGATGCAAGAAATCATGCTGTTAGTAAGCTTTTATACTCATCAATCTGTATTCACAGAATGTGTTGAAAACTCATGGAGGATAGAAGCTCCTGGTAAAAGTGATTCTACCATCAAACCACTGCTTCAACTGTTCAAAATGCTAGAGATTAAACCATATCAGAAGGCTGAGTTCACCCCTGATGAAGTTTCCAAAAAGCGGTTGCGAAATTCCGAGAAGCCTAATTATGTTGATGCTGCCTGCCAGGTTGAACCAGAAGAAGCTGCAGCTTTACATGCGATCAAGCAAAGAAAGGTTGATGAAACAGGGAGGGGTGTCAAACAGTTTCCGGAGCAGAATGAGAATGAACAATCTCTTTCAGAGTCAGCTTTGAATAAGCTTGTTGGAGCTACAGAAATCTATGATCTGGAGGAGAAGGATGCGCCGCGAGCGCTTAAGTGTGTACTGAAGCCCTACCAGAAACAAGCTCTCTATTGGATGTCAGAGATAGAAAATGGAAATAGGGCCGATACTGCTGAGACTAATCTCAACCCTTGTTGGTCTTCCTACAAAATATGTGAAGGGAGAATGATTTATGTGAATATCTTCACTGGAGAAGCAACAACCACCATTCCAAGAGCTACTCAGATGGCAAGAGGAGGGATTCTAGCAGATGCAATGGGACTTGGAAAAACAGTCATGACAATTGCTCTGATTCTCAGTAACACAGGCAGGGTTAATGCAGAAAATGATAATCTTATTACTAATAGGAGAAGGGGATCCTATAGGCCGCTTAATGGTGGCACTCTTATTGTTTGTCCCGTTGCATTGTTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAAGAAGGTAGTTTATCCATATTTATTCATTATGGTGGGGGTAGAACCACAGATCCTGAGTTGCTTGCAGCGCATGATGTTGTCTTAACAACATATACTGTCCTATCAGGAGCGTATAAAAATGATGGGGAGGGAAGCATCTACCACAGGGTCCAGTGGTACAGGGTTGTGCTAGATGAAGCTCATACTATTAAAGCCCATAAAAGTCAGGGTGCTATGGCTGCATTTGCTTTGACCTCACACTGCCGCTGGTGTCTAACTGGAACCCCTCTTCAGAATAGCTTGGAAGACCTTTACAGTCTGTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAACAAATTGATTCAAAGGCCTTATGAGAACAATGACCCAACAGCCTTGAAATTAGTGAAGGCCATTTTAAAGACAATGATGTTAAGAAGAACTAAGGAAACAAAGGATAAGCACGGAAGGCCCATTCTTCTCCTGCCACCAATTGATACTCATTTTATTGAGTGTGAGCAGTCAGAATCTGAACGTGACTTCTATGAGGCCCTCTTCACTAGATCTAAGGTCCAATTTGATCATTATGTTTCACAAGGAAAGGTTTTGCATAACTATGCGAATATCCTCGACCTGCTATTGCAATTGAGACGGTGTTGTAATCATCCATTTCTGGTTATGAGCGGTAACTCAGATAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCTTGCAGTCTAGTGCTGAGTCACTCGACATATGTAGTAGTGAAAATGATCCACAGAAACAAGCAGAGTTGAATAAACTCGCAACCAAATTCCTTAAGGATGCTGATTCTACTTCAACCTCCATGCAATCTCGTGCATACATTGAGGAAGTTTTGGAGCATATTCAAAAGGGTGAAAACTTAGAATGCCCTATATGCATGGAGGCACCAGATGATCCTGTGTTTACTCCTTGTGCACACAGGTTCTGCAGAGAATGCTTATTCAGTCACTGGGGGACCTCAGAGGGTGGTAAATGCCCAATCTGTCGTCAGCAACTCCAGAAAAGTGATCTGATTATTTGTCCATCTGAAAGTGCGTTCAAGGTTGATATTGAGAACAATATGACAGAGTCTTCAAAGGTTTCAAAGCTCTTGGATTTCTTGCAAAACATTCAGAAGTCATCCCCTTGTGAAAAAAGTATTGTGTTCAGTCAATGGACATCGTTCTTTGATCTATTGGAGAATCCTCTGAGAAGGAGAGGAATTGAGTTTCTGAGATACGATGGCAAATTGACCCAGAAACAGAGGGAGAAAGTTCTGACTGAATTCAATCAAACAAAAGAGAAAAGGGTCTTGTTGATGTCATTGAAAGCTGGTGGGGTTGGCCTAAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCAGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATTGGACAGAAGCGAAGGGTTGTTGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGATCGTTTGCGTCAAGTGCAGGCCAGAAAACAGAGAATGATAGCCGGTGCCCTTACTGATGACGATGTTCGGAGTGCCAGGATTCAAGATCTCAAAATGCTATTCACATGA 3369 0.4482 MGEHSVSEAKEGGGGVFQNVLPPSKNDDIVLLNGKPVIVAQPLTVVRSLTSTRVLAPHNSSDSLSQPGRVEATTGNNANEENSQEQETEPKRVSSEIQEKPRFVDDGDSQSEVVMETQVQQEPNGEGKRSTLSFEEFLQATNTKVASEEEALKPVAESVVVRVKEEPVVADDDEVAILRVKQTPKVEVKKEKVEERIPGLEDGEFDVPQGWLLMGRKVEIAISMAKGVRRLVDNEIVHFDFPRATSSRKFQPIVRISTRRSGGVGRLPMEWARTVVPLVQSGFVQVRGRCIAVPHNLQMMQEIMLLVSFYTHQSVFTECVENSWRIEAPGKSDSTIKPLLQLFKMLEIKPYQKAEFTPDEVSKKRLRNSEKPNYVDAACQVEPEEAAALHAIKQRKVDETGRGVKQFPEQNENEQSLSESALNKLVGATEIYDLEEKDAPRALKCVLKPYQKQALYWMSEIENGNRADTAETNLNPCWSSYKICEGRMIYVNIFTGEATTTIPRATQMARGGILADAMGLGKTVMTIALILSNTGRVNAENDNLITNRRRGSYRPLNGGTLIVCPVALLGQWKDELETHSKEGSLSIFIHYGGGRTTDPELLAAHDVVLTTYTVLSGAYKNDGEGSIYHRVQWYRVVLDEAHTIKAHKSQGAMAAFALTSHCRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWNKLIQRPYENNDPTALKLVKAILKTMMLRRTKETKDKHGRPILLLPPIDTHFIECEQSESERDFYEALFTRSKVQFDHYVSQGKVLHNYANILDLLLQLRRCCNHPFLVMSGNSDKYADLSRLARKFLQSSAESLDICSSENDPQKQAELNKLATKFLKDADSTSTSMQSRAYIEEVLEHIQKGENLECPICMEAPDDPVFTPCAHRFCRECLFSHWGTSEGGKCPICRQQLQKSDLIICPSESAFKVDIENNMTESSKVSKLLDFLQNIQKSSPCEKSIVFSQWTSFFDLLENPLRRRGIEFLRYDGKLTQKQREKVLTEFNQTKEKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVVVRRFIVKDTVEDRLRQVQARKQRMIAGALTDDDVRSARIQDLKMLFT 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91077g00003 1122 Pfam HIRAN domain 223 305 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc91077g00003 1122 CDD RING-HC 883 924 - -
Stsc91077g00003 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 726 IPR027417 -
Stsc91077g00003 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 739 1110 IPR027417 -
Stsc91077g00003 1122 CDD SF2_C_SNF 950 1071 - -
Stsc91077g00003 1122 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 116 1122 - -
Stsc91077g00003 1122 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 503 688 IPR014001 -
Stsc91077g00003 1122 ProSitePatterns Zinc finger RING-type signature. 900 909 IPR017907 -
Stsc91077g00003 1122 SMART ring_2 885 924 IPR001841 -
Stsc91077g00003 1122 MobiDBLite consensus disorder prediction 56 110 - -
Stsc91077g00003 1122 Gene3D - 742 1122 IPR027417 -
Stsc91077g00003 1122 SMART helicmild6 986 1069 IPR001650 -
Stsc91077g00003 1122 FunFam DNA repair protein RAD5B 500 727 - -
Stsc91077g00003 1122 Pfam Helicase conserved C-terminal domain 957 1069 IPR001650 -
Stsc91077g00003 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 836 949 IPR013083 -
Stsc91077g00003 1122 SMART ultradead3 443 705 IPR014001 -
Stsc91077g00003 1122 SUPERFAMILY RING/U-box 881 935 - -
Stsc91077g00003 1122 Pfam SNF2-related domain 450 804 IPR000330 GO:0005524|GO:0140658
Stsc91077g00003 1122 MobiDBLite consensus disorder prediction 84 109 - -
Stsc91077g00003 1122 MobiDBLite consensus disorder prediction 1 26 - -
Stsc91077g00003 1122 Pfam Zinc finger, C3HC4 type (RING finger) 882 930 - -
Stsc91077g00003 1122 ProSiteProfiles Zinc finger RING-type profile. 885 925 IPR001841 -
Stsc91077g00003 1122 MobiDBLite consensus disorder prediction 56 83 - -
Stsc91077g00003 1122 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 958 1118 IPR001650 -
Stsc91077g00003 1122 CDD DEXDc_SHPRH-like 447 726 - -
Stsc91077g00003 1122 Gene3D - 497 727 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91077g00003 Stsc-Chr91077 16008 22131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91077g00003 87 1121 RAD5 or RAD16-like Gene Family AT5G43530 56.526 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc91077g00003 SNF2_N 6.6e-81 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91077g00003 K15505 - gmx:100806677 1367.83