Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91074g00003 ATGCTTAGAATTATTTGTGGCATGGAAACAAGAGTGTATCGTAGCATTGTGTTATTGTTGTTGTTGTTCTTGTTTTTGGTTGTGGTGCTTGCTGGTTCTGTTTCTGGGAATGATTCTGATGGAGAATATGATAACTGCAACTGTGATGATGATGAAGGAGGGATTCTAAGCATACACAACATACTAGTTGGGCAGAAAGTGAGTGACTTTCTGATTTCCATTGCATATTTCTCCATACCCATTGAGCTACTTTACTTTGTGAGCCGTTCCAATGTCCCATTCAAACTGCTATTCCTTCTGTTCATAGCATTCATTGTGCTCTGTGGATTGACCCATTTGCTGAACACATATTCCTATCATGGCCCTCCTTCTTTCCAACTTGTGGTTTGTCTCACAGTTGCTAAGTTCCTCACTGCCCTTGTTTCTTGTGCAACTGCATTGACCCTTCCACCATTGATCCCTCTCCTCCTTAAGGTCAAGATCAGGGAGCTCTTCCTGAGGCAGAATGTCTTGGAATTGGACCAGGAAGTCGGGATGATGAAGAAGCAGAAGGAGGCGAGCTTGCACGTTCGGATGCTCACCAGGGAGATTAGGAAGTCCCTTGATAAGCATACCATATTGTACACCACTCTTGTTGAGCTCTCCAAGGCTCTGGATTTGGACAATTGTGCCGTTTGGATGCCGGATGAGGAGAGAAAGGAAATGCATTTAACACACGAATTGAAACCGAGCCCCCCCAGGGATTTTCGCAATTATGTCCCTAGGAATGATAAGGATGTTTTGGACATTAAAATGAATAGGGGGGTGAGGATTTTGCGGCCGGATTCTGCGCTGGGAATTGCGAGTAATGGCGGCCATGGGGGCTCTGGGGGTGCAGTGGCGGCTGTTCGAATGCCCATGCTTCGTGTTTCGAATTTCAAAGGGGGTACGCCGGAGAAGGTCGAGACGTGTTATGCTCTTCTGGTTTTAGTTCTTCCGAAATCAAACACTCGTGTTTGGACAAACCAAGAGCTGGACATAGTGGATGTAGTTGCTGATCAGGTAGCTGTGGCCTTGTCTCATGCATTCATTCTTGAAGAGTCACAGAGAATGAGACAAAAGCTTGCAGAGCAGAACCGAGTATTGCAGCAGGCTAGAAAGGATGCAATGATGGCCAGTCAGGCGAGGAAGGCTTTTCAGAAAGTGATGAGTCATGGGATGCGGAGGCCTATGCATTCGACTTTGGGGCTGCTATCGCTGCTTCAAGACGAAAACATGAGACCTGAACAGAAGATTATTGGTAACTCAATGCTGAAAGTTAGCAGGGTGCTCTCCAATTTGATTAATGATGTAGTAGGGATTTCAGAGAATGAAAAGGGAAGCTTTCCAATAGAAATGAAACCTTTCCCTCTACATACAATGATGAAGGAAGCTGCTTGTCTTGCCAAATGTTTGTGTGTATATAAAGGCTTCGGGCTTGAAATGGATGTCCAGAAATCATTGCCAGATCAAGTTGTTGGTGATGATGGGAGAGCCTTACAAGTAATTTTGCATATCATTGGAGATTTGTTGAACACATATGACCGAGGGAACCTCAAGTTTTGTGTGTTTCTAGAAAGTTATGGTGGAGATAAGGATGATACAATAAATGAAGCATGGAATATGAGGAATCAAAATGATTATGTACATATAAAATTTGATTTTCAGGTAACCAATGGTTCTCGGTCGGAGGAACCGGTTCCGACCATACATTATGCCAGCAGAGGGTACTGCAACAATGAACAGACAGAGGGCATGTGCTTCAGCCTGTACAAAAAGTTGGTGGAGATGATGCATGGTTATATCTGGATATCACCAAACTCTCAGGGTTTGCCGCAACGCATGACCCTTCTTCTGAAGTTTCGGAAAGCACCACCACTCGGAAAATCCATAGTTGCACCGAGAGATTATTCAAACTCACAGTTTAAAGGCCTCAAGGTTGTGTTAGCCGACGATGACTGTATAAACCGGATTGTGACCAAGAAGCTACTCGAGAAGCTTGGTTGTCAAGTAACTGCTGTTTCGTCGGGGTTTGAGTGCCTGAGTGCCATAAGCGCTTCTAACAACTCGTTCCGAATAATCATATTAGAGCTTCACATGCATGACATGGATGGCTCCGACGTGGCAGCTCGGATCCGGAACTTCCATAAGTGGCCCTTGATTGTAGCTCTTTTGTCGAGCACCGAAGAACAAGAGAAGCAGAGATGCATTCAGGTTGGAATGAATGGATTTGTTCACAAACCTGTACAACTTCATGAGATGGCTGATGAACTTGCAAGAGTGCTGCAACGTGCAGGTGNNNNNNNNNNTGGTGGAAACCGTTTTACTTCATGTTCTTCAAAATCTATAACTAGAAATAGAACATATATAGAATATGGGGACCTTTATTGGAACTTATTAAATCATACTATAACAATAAAACATAAATATAGTGGGTCCATTTTTCTGAACATTTCTATGATTTTGGTTATGTCTAAGCCTCTAAGGCTAACCATTTGCAGAAGATGA 2526 0.4359 MLRIICGMETRVYRSIVLLLLLFLFLVVVLAGSVSGNDSDGEYDNCNCDDDEGGILSIHNILVGQKVSDFLISIAYFSIPIELLYFVSRSNVPFKLLFLLFIAFIVLCGLTHLLNTYSYHGPPSFQLVVCLTVAKFLTALVSCATALTLPPLIPLLLKVKIRELFLRQNVLELDQEVGMMKKQKEASLHVRMLTREIRKSLDKHTILYTTLVELSKALDLDNCAVWMPDEERKEMHLTHELKPSPPRDFRNYVPRNDKDVLDIKMNRGVRILRPDSALGIASNGGHGGSGGAVAAVRMPMLRVSNFKGGTPEKVETCYALLVLVLPKSNTRVWTNQELDIVDVVADQVAVALSHAFILEESQRMRQKLAEQNRVLQQARKDAMMASQARKAFQKVMSHGMRRPMHSTLGLLSLLQDENMRPEQKIIGNSMLKVSRVLSNLINDVVGISENEKGSFPIEMKPFPLHTMMKEAACLAKCLCVYKGFGLEMDVQKSLPDQVVGDDGRALQVILHIIGDLLNTYDRGNLKFCVFLESYGGDKDDTINEAWNMRNQNDYVHIKFDFQVTNGSRSEEPVPTIHYASRGYCNNEQTEGMCFSLYKKLVEMMHGYIWISPNSQGLPQRMTLLLKFRKAPPLGKSIVAPRDYSNSQFKGLKVVLADDDCINRIVTKKLLEKLGCQVTAVSSGFECLSAISASNNSFRIIILELHMHDMDGSDVAARIRNFHKWPLIVALLSSTEEQEKQRCIQVGMNGFVHKPVQLHEMADELARVLQRAGXXXXGGNRFTSCSSKSITRNRTYIEYGDLYWNLLNHTITIKHKYSGSIFLNISMILVMSKPLRLTICRR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91074g00003 841 CDD HisKA 386 448 IPR003661 GO:0000155|GO:0007165
Stsc91074g00003 841 Pfam Response regulator receiver domain 653 763 IPR001789 GO:0000160
Stsc91074g00003 841 ProSiteProfiles Response regulatory domain profile. 652 768 IPR001789 GO:0000160
Stsc91074g00003 841 Pfam GAF domain 204 352 IPR003018 GO:0005515
Stsc91074g00003 841 FunFam Ethylene receptor 649 771 - -
Stsc91074g00003 841 Gene3D - 651 780 - -
Stsc91074g00003 841 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 453 IPR036097 GO:0000155|GO:0007165
Stsc91074g00003 841 SMART gaf_1 202 362 IPR003018 GO:0005515
Stsc91074g00003 841 SMART HisKA_10 388 453 IPR003661 GO:0000155|GO:0007165
Stsc91074g00003 841 CDD REC_ETR-like 651 764 - -
Stsc91074g00003 841 CDD HATPase_ETR2_ERS2-EIN4-like 494 625 - -
Stsc91074g00003 841 Gene3D - 192 352 IPR029016 -
Stsc91074g00003 841 SUPERFAMILY GAF domain-like 205 355 - -
Stsc91074g00003 841 Gene3D - 353 451 - -
Stsc91074g00003 841 SUPERFAMILY CheY-like 647 770 IPR011006 -
Stsc91074g00003 841 SMART REC_2 651 764 IPR001789 GO:0000160
Stsc91074g00003 841 Coils Coil 358 381 - -
Stsc91074g00003 841 FunFam Ethylene receptor 4 355 449 - -
Stsc91074g00003 841 Gene3D - 452 629 IPR036890 -
Stsc91074g00003 841 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 43 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91074g00003 Stsc-Chr91074 25061 28494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91074g00003 34 772 Miscellaneous Gene Families AT3G04580 56.233 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91074g00003 GAF 4.5e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91074g00003 K14509 - gmx:100811462 1016.14