Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91061g00001 ATGTCATCAGAAGCAGTGCAGTTGCGCATCAGTGACAATCATGTGGTTATGGACAATGGGATACTACAAGTGTATTTGTCGAAACCGGGTGGATATGTCACCAGAATACAATATAACGGCATTGATAATCTGCTTGAAGCTGGGAATGAGCAAGGCAACAGAGGGTATTGGGACGTTGTTTGGAGTAAAGAAGGGAGTACAGGAACTACTGGGATTTTTGAGCGGACTGTAGGGACGAGTTTTAATGTTGTAGTGGAAAATGAAGAACAAATTGAGATCTCGTTCACAAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCTCTCAATATTGACAAAAGGTATGTGATGCTACGTAATTCGTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTTAACATACCTCAAATCAGGATTGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCACTTCCAGAGGATCGATTACCTAGAAGGGGAAAAGTACTCACTCCCCCAGAAGCAGTTTTGCTTGTTGATCCTGTGGAGCCAGAGTTCAAAGGAGAGGTGGATGACAAGTACCAATACTCAAGCGAAAACAAAGATCTAAAGGTTCATGGGTGGATAAGTTCTAAATCGGAAAGTGATGGAGGCACAGGATTTTGGGTAATAATACCAAGCAATGAGTTTCGTACGGGTGGTCTTGTTAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGTTTCTTAGCGCTCATTACGCAGGTGAGGATATGGTCCTGAAACTCCGGCCGAACGAGCCTTGGAAGAAAGTTTTTGGCCCAACTTTTATATACCTTAATGCTTTGTTGGACAATGATGAAGACCCACTTCAGCTTTGGGAGGATGCAAAAGATCAGATGACTGAGGAAGTTGAAAATTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGTCTAGCGAAAGGGGCAGTGTAAGTGGCAGGTTATTTGTTAGAGACAGGATATTAAGTGAGGATTGCATTGGAGCAAGTGGTGCATACGTAGGACTAGCACCACCTGGAGAAGCTGGATCATGGCAAAGAGACAGCAAGGGTTACCAATTTTGGAGCATAGCAGATGATGATGGGTACTTCTCAATTGATAATATACGTAGTGGAGATTACAATATCTTTGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGTAATGATGTCCTCACCATAACTCCAGGTTGTGACAAAAAACTGAGTGACATTATTTTTGAGCCTCCAAGAGATGGTCCAACTTTATGGGAAATAGGAATTCCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCCAATCCAAATTATGTAAACAAGCTCTATATTGATCATCCAGATAAGTTTAGGCAATACGGCCTGTGGGAAAGATATTCAGAATTATATCCAAAGGAAGATTTAATTTATACTGTTGGTGAAAGTGATTACAGCAAAGATTGGTTCTTTGCTCATGTCACCAGGAAGAAAGATGATGGCACTTACCAAGCCACTACATGGCAAATTAAATTCCATCTTGATCATGTGGAGCCAAGTGGAATCTATAAGCTAAGATTGGCTCTTGCAAGTGCAAATCTCTCTAAATTACAGGTTAGAGTGAATGATGAAAAGCAAGATCCTCCACTATTTACAACAGGGGTGATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCACCATTGATGTGCTTTCTCATCAACTATTCGAAGGAAACAATACTATTTATCTAACTCAGGCCATGGCTACAAGCCCCTTGCCCCTCTTTCAGGGAATAATGTATGACTATATTCGTTTTGAATGTCCTAATTCTTCTTCTGTAAAAGAAATTCAAGTTTAG 1959 0.4125 MSSEAVQLRISDNHVVMDNGILQVYLSKPGGYVTRIQYNGIDNLLEAGNEQGNRGYWDVVWSKEGSTGTTGIFERTVGTSFNVVVENEEQIEISFTRMWDPSMEGKLSPLNIDKRYVMLRNSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRLPRRGKVLTPPEAVLLVDPVEPEFKGEVDDKYQYSSENKDLKVHGWISSKSESDGGTGFWVIIPSNEFRTGGLVKQNLTSHVGPISLAMFLSAHYAGEDMVLKLRPNEPWKKVFGPTFIYLNALLDNDEDPLQLWEDAKDQMTEEVENWPYDFPASEDFQKSSERGSVSGRLFVRDRILSEDCIGASGAYVGLAPPGEAGSWQRDSKGYQFWSIADDDGYFSIDNIRSGDYNIFAWVPGFIGEYWSNDVLTITPGCDKKLSDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYVNKLYIDHPDKFRQYGLWERYSELYPKEDLIYTVGESDYSKDWFFAHVTRKKDDGTYQATTWQIKFHLDHVEPSGIYKLRLALASANLSKLQVRVNDEKQDPPLFTTGVIGKDNAIARHGIHGLYWLFTIDVLSHQLFEGNNTIYLTQAMATSPLPLFQGIMYDYIRFECPNSSSVKEIQV 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91061g00001 652 CDD RGL4_N 8 297 - -
Stsc91061g00001 652 Gene3D - 5 280 IPR014718 GO:0030246
Stsc91061g00001 652 Coils Coil 552 572 - -
Stsc91061g00001 652 CDD RGL4_C 450 640 - -
Stsc91061g00001 652 Gene3D - 446 640 - -
Stsc91061g00001 652 FunFam Rhamnogalacturonate lyase B 336 435 - -
Stsc91061g00001 652 Pfam Polysaccharide lyase family 4, domain III 448 638 IPR029411 -
Stsc91061g00001 652 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Stsc91061g00001 652 SUPERFAMILY Starch-binding domain-like 340 430 IPR013784 GO:0030246
Stsc91061g00001 652 Gene3D - 336 435 - -
Stsc91061g00001 652 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Stsc91061g00001 652 CDD RGL4_M 339 438 IPR029413 -
Stsc91061g00001 652 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Stsc91061g00001 652 SUPERFAMILY Galactose mutarotase-like 11 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc91061g00001 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91061g00001 Stsc-Chr91061 5543 30972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91061g00001 1 643 Polysaccharide Lyase AT1G09890 63.297 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91061g00001 K18195 - gmx:100815677 1080.86