LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91059g00006	ATGGCTACGGGGAACGTGAACGGTGTGGCGCCATTTCTGAGCAAGACCTACGACATGGTGGATGACTCCTCCACTGACTCGGTTGTTTCCTGGAGCGATAACAGCAACAGCTTCGTCGTCTGGAACGTTCCCGAATTCGCAAGCCGAATCTTGCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTTAACACATACGGCTTTAGAAAGGTTGATCCTGACCGTTGGGAATTTGCTAATGAAGGGTTTCTAAGGGGACAAAAGCAGCTTTTAAAGAGTATCAGTAGGCGGAAAACTTCTCATGTAAATGGTAGTACTCAGCAACCATCTCAGGTGCAGAGCACACCTGTTGGTGGGGCTTGTGTTGAAGTCGGGAAGTTCGGAATTGAGGAAGAGATTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAGCAACAAACAACTGATAACCAGTTGCAAACTGTTGGGCAACGAGTTCAGGTAATGGAGCAGCGACAACAACAGATGATGTCATTCTTGGCAAAAGCCATGCATAGTCCAGGCTTCTTGGCTCAATTTGTACAACAGAATGAAAGTAATAGACACATCACTGGAGGAAATAAAAAGAGGAGGCTCCACAGGCAGGATGAAGATGGTTTAGCCAACAAGCATCTCCACAATTCTCTTGATGGTCGTGTTGTCAAGTATCAGCCTTCTATAAACGAGGCAGCAAAATCATTGTTATGCCAGATTTTGCAAATGAACAATTCTACCAGGATGGACTCATCAATTAAGAGCCCTGATGCATTCCTTATTGATGATGTCCCTACAGCCATTCCTTTAGATAGCAGTAGTTCATCCACTCGAGTTTCTGGTGTTACCCTTTCCGAGGTTCCACTTCCACAAACTTCTGGACAGTCATATGTGGCTGTAGAACCACAATTTCCTGTCAGTCAAATGACCAGTAGCAGATCTGAGGTTAAATCTTCACCAGCCGTGTTTCCTGACTGTGCCAAAGCGGCTGAATTTCCAGAATTAAATGCACATAAATGCCAAGACAGTGTTTTAGACTTTGGCCAAGTTCAAGGGATCAGAACTGAAAGCAGCTTCATGAATCCTGATCTCAGTTTTGTGGGGTCTGACACTTCAAATATGGAGGATATAGAAATGATGTCAACTGTTTTGGGTGGAACACAGTCTATAGAAGCTAATGCTTTTTCACCTGATGCAGATGGAATTTCTAAGCTTCCTGGAATTGGTGATGAATTCTGGGAACTGTTTTTGAGGCCGAGTCCTCTCACTGGAGATACTGATGAAGTTAAATGTAACTCTCTGGGATTTGATTTTACTGGTGACCAGGAATTGTCATCAGAAAAGGAGATTCAACAGGAAAATACTGCTGATAAAAAACAGCATATGGATCATCTTACTCAACAGATGGGTCTTCTTGCTTCAAAGTCTTAA	1482	0.4339	MATGNVNGVAPFLSKTYDMVDDSSTDSVVSWSDNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKTSHVNGSTQQPSQVQSTPVGGACVEVGKFGIEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFLAQFVQQNESNRHITGGNKKRRLHRQDEDGLANKHLHNSLDGRVVKYQPSINEAAKSLLCQILQMNNSTRMDSSIKSPDAFLIDDVPTAIPLDSSSSSTRVSGVTLSEVPLPQTSGQSYVAVEPQFPVSQMTSSRSEVKSSPAVFPDCAKAAEFPELNAHKCQDSVLDFGQVQGIRTESSFMNPDLSFVGSDTSNMEDIEMMSTVLGGTQSIEANAFSPDADGISKLPGIGDEFWELFLRPSPLTGDTDEVKCNSLGFDFTGDQELSSEKEIQQENTADKKQHMDHLTQQMGLLASKS	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91059g00006	493	ProSitePatterns	HSF-type DNA-binding domain signature.	51	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	SUPERFAMILY	"Winged helix" DNA-binding domain	8	101	IPR036390	-
	Stsc91059g00006	493	MobiDBLite	consensus disorder prediction	459	479	-	-
	Stsc91059g00006	493	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	300	IPR027725	-
	Stsc91059g00006	493	FunFam	Heat shock transcription factor 1	5	102	-	-
	Stsc91059g00006	493	Coils	Coil	130	157	-	-
	Stsc91059g00006	493	PRINTS	Heat shock factor (HSF) domain signature	50	62	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	PRINTS	Heat shock factor (HSF) domain signature	12	35	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	SMART	hsfneu3	8	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	Pfam	HSF-type DNA-binding	12	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc91059g00006	493	MobiDBLite	consensus disorder prediction	457	479	-	-
	Stsc91059g00006	493	Gene3D	-	5	103	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91059g00006	Stsc-Chr91059	31162	34543	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91059g00006	6	493	HSF	AT5G16820	50.696	1.01e-149	434

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc91059g00006		HSF_DNA-bind	1.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91059g00006	K09419		-	qsa:O6P43_001765	555.829