Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91049g00007 ATGGATTACTGTCTCCAAGATCATGGAAACAACAGCAACAATGGCACTGCACTTATATCTACAGTAGCTTCCATTGCAGCCTCAGCTATGCTAATTCGAACCATTGCCTATGATTACATTCCTCATGACATCTTAAACTACTTCTACTTGAAGCTTCATGAAATGAAGCGTTTCTTCTCTTCCCAACTCACCATTGTGATTGAAGAATTCAAAGGAGTTTCCAAGAACCAAGTGTATGAGGCTGCAGAGGTCTATTTAGGAAGCAAAGGCACACTCTCTGCACTCAGAGTTAAAGCAAGCAAATCTGAGGAGGACAAGAATCTTGCATTTGTTGTGGACAAGAATCAACAAGTCTGTGATGATTATGAAGGAGTCATGGTGTGGTGGAAGCTTTGCTGTGAGTATGTTGCTTCAACTGGTAACAAAGAACACCCTGATGATGTGAATGCTTCTTTGAGATCAGAGGTAAGATCCTATGAACTCACCTTCCACATGAAACACAAAGAGAAGATCTTCAATTCATATCTGCCTTTTGTGTTGGAAAGAGCAAAGGCTATTAGAGAAGGGAACATGGCTTTGAAGCTTCACACTATTGAATATGATCACTTTTGGGTTGGAGAAGTCAAGTTTTGTCACCCCATGAGTTTCAAGACTCTTGCAATTGATGATGAACTCAAGAAGGAGATAGTTGATGATTTGGACAAGTTTGTGAATGGAAAAGAGTTCTATAAGAGGATTGGGAAGCCTTGGAAGAGAGGCTACCTGCTACATGGTCCTCCGGGGACAGGGAAAACGAGTCTCGTCGCGGCCATGGCCAATTATCTTAGTTATGATATCTATGACTTGGATCTCACTGCTGTTAGTAGCAATAAGGACTTGAAGAATCTGATCCTTGGCATGTCCAATCGTTCCATACTTGTGATGGAGGATATTGATTGCTCTATAAAGCTGCCCAATAGAGAAGAAGGAGAAGAAAAAGAAGAGAATAACAAGGAAGCAGATAAAAGTGAAGATAGCAAGGTGACACTTTCAGGGCTGTTAAATGCAATAGATGGTCTGTGGTCATGCTGTGGTGAGGAAAGAATCATAGTATTGACAACAAATCACAAAGAAAAGCTTGATCCTGCTCTTCTAAGGCCTGGAAGAATGGACATGCACATTCACTTGTCATACTGCACCTTTTCTGCCTTTCAGCAATTGGCCTTCAACTACCTTGGCATCTCACATCACAAACTCTTTCAACAGATTCAAGGGCTTCTAGGAAAAGTCCAGGTTACCCCTGCAGAAATCTCAGGAGAGCTAACAAAGAACTTCAATTCTAAAGCACCCTTACAAGAACTTGTCAGATTCTTGCACAGCAAGGATGTAGTGCAAGAAAATCCCAAAGAACCCCTACAAGAACTTGTGATGCTCTAG 1416 0.4153 MDYCLQDHGNNSNNGTALISTVASIAASAMLIRTIAYDYIPHDILNYFYLKLHEMKRFFSSQLTIVIEEFKGVSKNQVYEAAEVYLGSKGTLSALRVKASKSEEDKNLAFVVDKNQQVCDDYEGVMVWWKLCCEYVASTGNKEHPDDVNASLRSEVRSYELTFHMKHKEKIFNSYLPFVLERAKAIREGNMALKLHTIEYDHFWVGEVKFCHPMSFKTLAIDDELKKEIVDDLDKFVNGKEFYKRIGKPWKRGYLLHGPPGTGKTSLVAAMANYLSYDIYDLDLTAVSSNKDLKNLILGMSNRSILVMEDIDCSIKLPNREEGEEKEENNKEADKSEDSKVTLSGLLNAIDGLWSCCGEERIIVLTTNHKEKLDPALLRPGRMDMHIHLSYCTFSAFQQLAFNYLGISHHKLFQQIQGLLGKVQVTPAEISGELTKNFNSKAPLQELVRFLHSKDVVQENPKEPLQELVML 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91049g00007 471 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Stsc91049g00007 471 PANTHER BCS1 AAA-TYPE ATPASE 20 455 - -
Stsc91049g00007 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 430 IPR027417 -
Stsc91049g00007 471 Pfam Domain associated at C-terminal with AAA 40 132 IPR025753 -
Stsc91049g00007 471 MobiDBLite consensus disorder prediction 318 337 - -
Stsc91049g00007 471 CDD RecA-like_BCS1 229 389 - -
Stsc91049g00007 471 Pfam ATPase family associated with various cellular activities (AAA) 255 390 IPR003959 GO:0005524|GO:0016887
Stsc91049g00007 471 Gene3D - 207 387 IPR027417 -
Stsc91049g00007 471 Gene3D - 388 456 - -
Stsc91049g00007 471 SMART AAA_5 250 393 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91049g00007 Stsc-Chr91049 24275 25761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91049g00007 248 389 Calmodulin-binding Proteins AT3G56690 31.757 4.80e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91049g00007 K08900 - gmx:100778503 652.129