Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91047g00010 ATGCTGGTAGCAATCCTGCTCTTCCACAAGTTGGTAGAGNNNNNNNNNNTTCCGCCATCTTTCCCAGATGGGTCTTCTCCTCCAATGGTTAAAACCAGATTGTGCAACAAGTTTAATTCAAGCGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGATTGGCAAGCCTACAATGCCTTCATATGAAGATAGACCAAGGATGGGTGGGCGAGTTGAGCCCCCAGCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCTACTGCGAAGATTAGTATCAATGCTGCCCTAGCCGGAGCTGTTATTGGGAAAAATGGTATCAACTCTAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAACATGATTCTGATTCTAACCTTAAAAACATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCAAGTTCCATGGTCCATGAACTTATTCTGAATGTTAGTGCGGCGGCTGGACCTGCAAAGAAGAATGTCAGTTCATATGGTCCTGGTTCAAACAACTTCAAAACCAAGCTGTGTGAGAAATTTTCGAAAGGCTCCTGCACTTTCGGGGATAAGTGCCATTTTGCCCATGGAATAGAAGAATTACGCAAGAGTGGAATGTGA 651 0.4424 MLVAILLFHKLVEXXXXPPSFPDGSSPPMVKTRLCNKFNSSEGCKFGDKCHFAHGEWEIGKPTMPSYEDRPRMGGRVEPPAHGAAAGFGASATAKISINAALAGAVIGKNGINSKQICRVTGAKLSIREHDSDSNLKNIELEGSFDQIKQASSMVHELILNVSAAAGPAKKNVSSYGPGSNNFKTKLCEKFSKGSCTFGDKCHFAHGIEELRKSGM 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91047g00010 216 SUPERFAMILY CCCH zinc finger 27 59 IPR036855 GO:0046872
Stsc91047g00010 216 ProSiteProfiles Type-1 KH domain profile. 91 155 - -
Stsc91047g00010 216 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 84 161 IPR036612 GO:0003723
Stsc91047g00010 216 FunFam Zinc finger CCCH domain-containing protein 177 213 - -
Stsc91047g00010 216 Gene3D - 24 61 - -
Stsc91047g00010 216 Gene3D - 182 214 - -
Stsc91047g00010 216 CDD KH-I_AtC3H36_like 95 159 - -
Stsc91047g00010 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 56 IPR000571 GO:0046872
Stsc91047g00010 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 207 IPR000571 GO:0046872
Stsc91047g00010 216 PANTHER CCCH ZINC FINGER/TIS11-RELATED 171 213 IPR045877 GO:0003729
Stsc91047g00010 216 Gene3D K Homology domain, type 1 85 181 IPR036612 GO:0003723
Stsc91047g00010 216 FunFam Zinc finger CCCH domain-containing protein 24 61 - -
Stsc91047g00010 216 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Stsc91047g00010 216 SMART c3hfinal6 182 208 IPR000571 GO:0046872
Stsc91047g00010 216 SMART kh_6 90 160 IPR004087 GO:0003676
Stsc91047g00010 216 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Stsc91047g00010 216 Pfam KH domain 94 156 IPR004088 GO:0003723
Stsc91047g00010 216 SUPERFAMILY CCCH zinc finger 182 212 IPR036855 GO:0046872
Stsc91047g00010 216 ProSiteProfiles Zinc finger C3H1-type profile. 182 209 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91047g00010 Stsc-Chr91047 31697 35395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91047g00010 184 212 C3H Transcription Factor Family AT1G68200 60.000 8.19e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc91047g00010 KH_1 1.6e-09 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91047g00010 - - gmx:100818781 317.005