Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91047g00008 ATGGCGATGAATAATAACTTCAACAATGTCTCAGATTCAGCTGCGAAACGTTTGAGGTACGAAGAGAGTGCAGGGTTTCAGAAATTCAAAGGCGTTGTGCCTCAGCAAAACGGCCATTGGGGCGCACAAATCTATGCAAACCACCAGAGAATATGGCTGGGCACGTTCAAGACTGAAAGAGAAGCCGCCATGGCTTACGACAGCGCAACCATCAAACTAAGAAGCGGCGAAAGCCATCGGAACTTCCCTTGGAACGATCAAACCGTCCAGGAGCCTTATTTCCAGAGCCATTACAGCACGGAAACAGTCCTCGCCATGATCAGAGACGGTACTTATCCTTCGAAATTCACATCTTTTCTTAGAAATCAAAACCACGGAGTCCATAATAAAGAAGAATCTTTAGCAAAAGGCTGTTCGAATATCAACAAATGCATAAGAATTCGAGGAGGCGAACAGTTTTCTTGCACGCAATTGTTTCAGAAGGAGTTAACTCCAAGCGACGTTGGGAAACTGAACAGGCTGGTGATTCCGAAGAAGCATGCGGTTACTTATTTGCCTTATGTTGATGGGAATAGTAATAATAATAATAATGCTACGGCGGAAACAGCCGAATGCCGAGGCGTTGATGTGGAGGTTGTGTTTTATGATAAGTTGATGAGGTCGTGGAAATTTAGGTACTGTTATTGGAAGAGTAGCCAGAGTTATGTGTTCACCAGAGGGTGGAATCGTTTCGTGAAGGACAAGAAACTGAAGGCTAAAGATATTATTGCGTTTTACATGTGTGAGCCTGTGAATAATTCTAACGACGTTCATCGTCAGCAGAGTATGTTTGGGTTGATCGATGTGATTTATAATACAGAACATGATGATACAATGCATGGTAATAATAATAATGTGGATGTTGAAACGATGAGAAAACAGGTAATGGGGAAGAGTACTATTAATTATAGGTTAGGGTGCAGTGATGTAGTTGTAGAAGATAGGGGAGATTATATGGAAGAAGATGAAGATGATGAAGAAGAAGAACATAAAGTAGATGGAAATTCAACGAATAAAAGTGTGAGGCTCTTCGGAGTATCTATCAGCTGA 1089 0.4178 MAMNNNFNNVSDSAAKRLRYEESAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSHYSTETVLAMIRDGTYPSKFTSFLRNQNHGVHNKEESLAKGCSNINKCIRIRGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPYVDGNSNNNNNATAETAECRGVDVEVVFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYMCEPVNNSNDVHRQQSMFGLIDVIYNTEHDDTMHGNNNNVDVETMRKQVMGKSTINYRLGCSDVVVEDRGDYMEEDEDDEEEEHKVDGNSTNKSVRLFGVSIS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91047g00008 362 SMART B3_2 159 269 IPR003340 GO:0003677
Stsc91047g00008 362 ProSiteProfiles B3 DNA-binding domain profile. 159 274 IPR003340 GO:0003677
Stsc91047g00008 362 CDD B3_DNA 158 260 IPR003340 GO:0003677
Stsc91047g00008 362 SUPERFAMILY DNA-binding pseudobarrel domain 157 264 IPR015300 -
Stsc91047g00008 362 Gene3D AP2/ERF domain 27 84 IPR036955 GO:0003700|GO:0006355
Stsc91047g00008 362 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 361 IPR044800 GO:0003700
Stsc91047g00008 362 FunFam AP2 domain-containing protein RAP2.8 27 84 - -
Stsc91047g00008 362 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Stsc91047g00008 362 ProSiteProfiles AP2/ERF domain profile. 28 83 IPR001471 GO:0003700|GO:0006355
Stsc91047g00008 362 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Stsc91047g00008 362 MobiDBLite consensus disorder prediction 332 362 - -
Stsc91047g00008 362 Gene3D - 154 277 IPR015300 -
Stsc91047g00008 362 SMART rav1_2 28 89 IPR001471 GO:0003700|GO:0006355
Stsc91047g00008 362 Pfam AP2 domain 28 74 IPR001471 GO:0003700|GO:0006355
Stsc91047g00008 362 Pfam B3 DNA binding domain 159 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91047g00008 Stsc-Chr91047 25524 26612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91047g00008 28 282 RAV Transcription Factor Family AT1G51120 60.755 1.25e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Stsc91047g00008 B3 4.5e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91047g00008 K09287 - qsa:O6P43_002489 350.132