Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91046g00005 ATGAGGGATAGCAAGAAGTCAAAGAATAGGGGATTGCAAAAGTCCATTCATTCAAAGGTGCAAACTGAGTCAAAGCTAAATTCATCCTTGAGAGTCAAAACAAAGAGCACAAAGTGCCAAGGGAAGAAGCATAAGCTGAAATCAAAATCTCACACACAAAGAAATGCATCTAACAGGTCAAGGAAGAGAGCTACTGACGCTTCCGTCAAAGGGCCTAACAAGGAGCCTTCAAAAAAGAAATTGATTATTAGGTTTAGTTTGCATGAAACTGATGAAAAGTCTTCAACCAAGTTGTCTTCAAAATCAAAGCTAAAAGGTGAAAAGGTTTCTTTTTGTTCTAAAAAAGAGAGTAAAAATGTTGATGATGAGGTAGAGATTCAAAAGAGAAAGAGAAAGAGAAAAAAGAAAAGGCAGAGGAATAATGCAGATATCGATGATGCTTCTCGCCTCAAGAGGAGAACAAGATACCTATTAATCAAAATGAAGCTAGAGCAGAGCCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAACGAGCTACAAAGAGCATGGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCGTTGAATAGCAGTGAAGATTCTGTTATTGTTACAGATGGATCTAATTGCCATGAACATAAATACTGTCAGAAGTGCAAATCACAAGCTATTCGGGATAAGGATATTATACGATGTGATGGTACATGCAATCGCACTTTTCACAAAAGATGTCTTGATCCTGCCTTAAACACTGAAAATAAACATGGCTGGCTTTGCAAGTTTTGTGGATGTAAGATGGAAATACTGGAGGCATTGAATGCTCATCTTGGAACTCACTTCTCCTTGAACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTAAACCCGATGGTGATACTGCATTACTGAACCCTGAGGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGATCCAGAGAGGAGAGAGGACTGCCACAACATCAACACAGAAGGAAGCGATGATGATTTAAGCAGTTCTACCAGTTTATGTTCTTCAGATGGCGAATGTTCTCTAGTAGATGAAGGTTTCAACCATGAATATTCATCTCTTAATGGATGCTTAGATTCTAATGAATCTGAGGAAAATGTCTGTGGCCCCAGACAGCGAAAAACAGTTGACTACAAGCAACTTTATGATGAAATGTTTGGGAAGGATGCTGCTGCATGTGAACAAGTGAGTGAAGATGAAGACTGGGATCCTATTAAAAAAAAGCGAAGAGACAAGGAGTCCGATGCTGTTGATACTCTTATGACTTTGCATGAATGCCAGAATAGAATTCACAACAGTGAGAACAACAACATGAAACGAGAGGATTCTCTGGGCAAACAAATCAAGAGGTCTTGTTTTCGGATTCCTCGTGAAGCAGTTGAGAAGCTTCGCCAAGTCTTTGCAGAGAATGAACTTCCTCCAAGATCCAAGAAGTTGGCTCTCTCAAAAGAGTTGGGACTCGATATTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTCAAAAGCAGAAAGCAACACACAGAGGGATCTGGTCTGCCTCAGACTTCTGATTCAAAGGATAACAGATTACAAGACTCGGATAGAGCTGAGGTTTCTAAACCAAAAGCATCAAAAAGTATTATTGATCATTCTCTGAAGAATGGTAAGGCTGTCAATGGTAGAAAGAAAAGACGACCAGAAGTATCTGCAAGTCAGCCAGAAAATAGCAATAAGGACATGGAAGAGGAGCTCAGTGATGATGTGTGCTTGATGAAACTGTTGAAAGATAAAAAGAAGAAAATGAACTCTGCATTTGAAGGGTACTCTCATACAGCAGAGTTGGAATTTGAAAGACTAAGCAGAGTGAAGGATAAACTGGATAATTTGAGGCAAAAATTAACTGCAATTCTAAATTACAGGGAAAATTCTTCTAAGGCATCCCATTCTAATGGACCATCAATTATGTATGTGCCCACTGCTGTGTTAAGGGAAAAGGTTGCATAG 2100 0.3933 MRDSKKSKNRGLQKSIHSKVQTESKLNSSLRVKTKSTKCQGKKHKLKSKSHTQRNASNRSRKRATDASVKGPNKEPSKKKLIIRFSLHETDEKSSTKLSSKSKLKGEKVSFCSKKESKNVDDEVEIQKRKRKRKKKRQRNNADIDDASRLKRRTRYLLIKMKLEQSLIDAYSGEGWKGQSREKIRPENELQRAWKQILKCKLSIRDAIHQLDSLSSLNSSEDSVIVTDGSNCHEHKYCQKCKSQAIRDKDIIRCDGTCNRTFHKRCLDPALNTENKHGWLCKFCGCKMEILEALNAHLGTHFSLNSTWQDVFKEEAAKPDGDTALLNPEEEWPSDDSEDDDYDPERREDCHNINTEGSDDDLSSSTSLCSSDGECSLVDEGFNHEYSSLNGCLDSNESEENVCGPRQRKTVDYKQLYDEMFGKDAAACEQVSEDEDWDPIKKKRRDKESDAVDTLMTLHECQNRIHNSENNNMKREDSLGKQIKRSCFRIPREAVEKLRQVFAENELPPRSKKLALSKELGLDIEKVSKWFKNARYSALKSRKQHTEGSGLPQTSDSKDNRLQDSDRAEVSKPKASKSIIDHSLKNGKAVNGRKKRRPEVSASQPENSNKDMEEELSDDVCLMKLLKDKKKKMNSAFEGYSHTAELEFERLSRVKDKLDNLRQKLTAILNYRENSSKASHSNGPSIMYVPTAVLREKVA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91046g00005 699 Coils Coil 644 664 - -
Stsc91046g00005 699 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Stsc91046g00005 699 ProSiteProfiles 'Homeobox' domain profile. 481 541 IPR001356 GO:0003677
Stsc91046g00005 699 Pfam PHD-finger 237 286 IPR019787 -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 1 108 - -
Stsc91046g00005 699 ProSiteProfiles Zinc finger PHD-type profile. 235 287 IPR019787 -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 318 365 - -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 59 108 - -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 329 343 - -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 559 581 - -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 36 58 - -
Stsc91046g00005 699 SUPERFAMILY FYVE/PHD zinc finger 228 289 IPR011011 -
Stsc91046g00005 699 Pfam Homeodomain 491 536 IPR001356 GO:0003677
Stsc91046g00005 699 Gene3D - 483 549 - -
Stsc91046g00005 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 295 IPR013083 -
Stsc91046g00005 699 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 17 697 - -
Stsc91046g00005 699 FunFam pathogenesis-related homeodomain protein 483 547 - -
Stsc91046g00005 699 ProSitePatterns Zinc finger PHD-type signature. 238 284 IPR019786 -
Stsc91046g00005 699 SUPERFAMILY Homeodomain-like 484 546 IPR009057 -
Stsc91046g00005 699 CDD homeodomain 489 545 IPR001356 GO:0003677
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 14 35 - -
Stsc91046g00005 699 SMART HOX_1 481 545 IPR001356 GO:0003677
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 539 615 - -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 120 147 - -
Stsc91046g00005 699 SMART PHD_3 237 285 IPR001965 -
Stsc91046g00005 699 MobiDBLite consensus disorder prediction 543 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91046g00005 Stsc-Chr91046 20547 24665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91046g00005 140 558 Homeobox Transcription Factor Family AT4G29940 53.075 6.21e-133 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc91046g00005 Homeodomain 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91046g00005 - - gmx:100787118 759.599