Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91046g00002 ATGTCGTCGTGTCTAAGTGGAGCTGGCGGAAGAACCTATGGCTTCGATTTGGAATTCGTTAAGTCCACATCGTCTCCATCAATCACCAGAACTTCACACACTTCATCTTCATCACCATCTTCAACCATCTCCGAATCCAGCAACAACACTCAGCTTGCAATCTCAACCCGTAAGCCAAGAACCGCAAGGAAGCGCCCCAACCAAATCTACAACGAAGCCGCGGCGCTTCTTTCCACCGCATACCCCAACCTCTTCTCAACAAACACGCTCAAAAGCTTCGCCAAACCATCCTCCCAATACAGTAACAGTATTAGTGTTTCCAATACGGCGTCGTTTTTGGACGACTCATCTGAGGAGGTGTTTTTGCCGTTCAGGGTGTTCGATACGTCGTCGTCGTTCCTGCTCCACCAGTACAAGCCGTCGGCGTGCTTTACGGTGGAGCCTAAGGTGGTGAGTGTGCAGCCATGCCAGAGCCCAGGGGAAATAAGCTCCAGGGTGAATTCATTGGAATTGGAGGACCATAATAATAACCACCATTGCGGTGGCGGAGAAGAGGATTTCGATGCGGAATCGATGCTCGACGAGGAAATCGAGGAGGGAATCGATAGCATCATGGGGAGCGGGGTTGAATTGGAATCATCCTCCATTGATGCGGCTTCTTCGGATAATAATCCGTGGAGTTCTTTTGGCGGGAAACTGGATTTCCGGCTAGGGTTGCGTAGGGCCGGCGTGAGGGCACTCCGCAGCGCCGACGACGGCAATTGGTGGAATTTACCGGCGGTTGATATCCTCCAGATATCGCCTAAGGTTGTAAGCATTAACAAGCCTGCGCCGCAACAACCACCGGTGGCTCCGGCAGCTGAAAAGGCGAAAAAGAAGAAGAAGAAGGTGGAGAAACCGAGCGTTGAAGTGAAGAATAAGATCGATGAATTGCCGAAAGTGAATAACAGTGAAGCCGCTGTTCCGAAATTGAATTCCGGATTGATGTTGAAATTGAATTACGACGGTGTCAGGGATAGTTGGTCCGACAAGGGCTCGCCGTTCGGCGATGACGCCTCAGCCTCCGATTCGCCGGGAAATGACCTCACCGCACGGTTGTCACAAATAGATTTGTTATGGGAGAACGGGGGAGTGAGAGAAGCTAGCGTGCTTCGCTACAAAGAAAAACGGCGTACACGCCTCTTCTCCAAGAAGATCAGGTACCAAGTAAGGAAGGTCAACGCTGATCGACGGCCCAGAATGCAGGGGCGATTTGTTAGGAGGCCGAATTGTAGCTCAAATGCGCAAAGATGA 1293 0.5128 MSSCLSGAGGRTYGFDLEFVKSTSSPSITRTSHTSSSSPSSTISESSNNTQLAISTRKPRTARKRPNQIYNEAAALLSTAYPNLFSTNTLKSFAKPSSQYSNSISVSNTASFLDDSSEEVFLPFRVFDTSSSFLLHQYKPSACFTVEPKVVSVQPCQSPGEISSRVNSLELEDHNNNHHCGGGEEDFDAESMLDEEIEEGIDSIMGSGVELESSSIDAASSDNNPWSSFGGKLDFRLGLRRAGVRALRSADDGNWWNLPAVDILQISPKVVSINKPAPQQPPVAPAAEKAKKKKKKVEKPSVEVKNKIDELPKVNNSEAAVPKLNSGLMLKLNYDGVRDSWSDKGSPFGDDASASDSPGNDLTARLSQIDLLWENGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMQGRFVRRPNCSSNAQR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91046g00002 430 Pfam CCT motif 379 421 IPR010402 GO:0005515
Stsc91046g00002 430 MobiDBLite consensus disorder prediction 275 301 - -
Stsc91046g00002 430 MobiDBLite consensus disorder prediction 25 57 - -
Stsc91046g00002 430 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Stsc91046g00002 430 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 424 - -
Stsc91046g00002 430 MobiDBLite consensus disorder prediction 25 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91046g00002 Stsc-Chr91046 15621 17945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91046g00002 328 421 C2C2-CO-like Transcription Factor Family AT1G25440 45.217 1.21e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91046g00002 CCT 8.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91046g00002 - - adu:107496352 621.698