Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91046g00001 ATGCAGACAAGAGCTGAGTATGACAAGGAATGTAAGATTTGTACACGGCCATTTACTGTCTTTAGATGGAGACCTGGTCGGGATGCAAGGTATAAGAAGACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTTTGTCTTCTGGATCTAGAATATGGGTTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTTTTTCGCTGAAGAGCATGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATGTTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATAGTGTCAATGATCCTGTGGCTTTGAAGCTACTTGGTAAGGCTGGAGAAATGACTTCTTTGGAGGCTCCCGAGGATGAGAGCATCAAAACACTTTATGTCGGTGGACTTGATGTTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTTACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCTGAAGAACTATCCAACAAGCTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCACAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCAGTGGCTCACAGTGGGTTGTTGCCTCGGGCACTTATATCGCAACAGCAGAATCAGGATCAAGGGCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCATCGACGGATCCGCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCAGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAATATGGAGAAGCCACAAATGCAACACTATGCCCATCCAATGATGCCTCCTCCTCCTCCTCCTGGCCAATATCATCATCATCATCCTCCTCCTCGTCAGTACTATCCTCCTCCATATGGTTATATGCCACCAGTTCCCCCTAATCAGCAATACCCACCACCATATAGTGCTCAAATGACGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCCATGCACCCCGGTTCTTCACAAGCAGGGTCTGGACAGGTCGGCTCTGGATCTGCACCAACTGAAGCTGGATCATCAGCATCAGGGTCACAGCAGCAGTGA 1332 0.4707 MQTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYSVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDVRVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRALISQQQNQDQGQGMPYYNNPPPPQQERSYYPSTDPQRMGALIPSQEGPPGGPSGSGENKPNMEKPQMQHYAHPMMPPPPPPGQYHHHHPPPRQYYPPPYGYMPPVPPNQQYPPPYSAQMTPSQPPAANHPYHHHPMHPGSSQAGSGQVGSGSAPTEAGSSASGSQQQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91046g00001 443 Gene3D - 159 256 IPR012677 -
Stsc91046g00001 443 MobiDBLite consensus disorder prediction 416 443 - -
Stsc91046g00001 443 FunFam Zinc finger CCCH domain-containing protein 40 160 256 - -
Stsc91046g00001 443 CDD RRM_RBM22 174 247 - -
Stsc91046g00001 443 MobiDBLite consensus disorder prediction 248 268 - -
Stsc91046g00001 443 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Stsc91046g00001 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 248 IPR000504 GO:0003723
Stsc91046g00001 443 SUPERFAMILY RNA-binding domain, RBD 169 256 IPR035979 GO:0003676
Stsc91046g00001 443 MobiDBLite consensus disorder prediction 281 443 - -
Stsc91046g00001 443 SMART rrm1_1 176 244 IPR000504 GO:0003723
Stsc91046g00001 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 235 IPR000504 GO:0003723
Stsc91046g00001 443 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 3 146 IPR039171 GO:0003723
Stsc91046g00001 443 MobiDBLite consensus disorder prediction 347 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91046g00001 Stsc-Chr91046 198 2929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91046g00001 167 236 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 1.10e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91046g00001 K12872 - gmx:100779917 649.818