Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91044g00006 ATGGATTTCGATTCCCTCGACGATTTCTTCGATTTCGATGATTTCATCCGCCATTCTCCCCCTCCCTCCTCCGATTTCCTTTGGTCCAATCCAAGTGCGAGCTCTGAAATTGGCTTTTCAGCAGGAGGTAGTAGTGCTGGTGGTAGTAGTGATGTCTGCCCAAAGAAAACCAGAAAAAGGGGACATGATAGTTCATGTTGCAAGGCAGGGACAAAGGCTGGCCGTGAAAAGTTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGTGCTGTGTTGGAACCTGGGAGACCTGCGAAAACTGATAAAATGGCCATACTTGATGATGCTATCAGAGTTTTGAAACAACTTAAAACTGAAGCTGAGGAACTCAAAGAAACGAATGCAAAATTGTTAGAAGAAATAAAATGTTCGAAGGCAGAAAAAAATGAACTCCGAGAAGAGAAACTTGTTCTGAAAGCAGATAAAGAAAGGATTGAGAAACAGTTGAAAGATTTTCCCGTTCAACCTGCAGGATATATGCCTCCCAATCTAGCTCCTTTCCAAGCAGGGGTCAACAAAGTCGCTGTTTATCCGAACTATGGTTATATGCCAATGTGGCATTATCTTCCTCCATCTACCCGTGATACATCCCATGATCACGAGCTTAGGCCTCCTGCTGCATAA 669 0.441 MDFDSLDDFFDFDDFIRHSPPPSSDFLWSNPSASSEIGFSAGGSSAGGSSDVCPKKTRKRGHDSSCCKAGTKAGREKLRRERLNERFCDLSAVLEPGRPAKTDKMAILDDAIRVLKQLKTEAEELKETNAKLLEEIKCSKAEKNELREEKLVLKADKERIEKQLKDFPVQPAGYMPPNLAPFQAGVNKVAVYPNYGYMPMWHYLPPSTRDTSHDHELRPPAA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91044g00006 222 Coils Coil 108 163 - -
Stsc91044g00006 222 SMART finulus 73 124 IPR011598 GO:0046983
Stsc91044g00006 222 Pfam Helix-loop-helix DNA-binding domain 71 119 IPR011598 GO:0046983
Stsc91044g00006 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Stsc91044g00006 222 MobiDBLite consensus disorder prediction 38 67 - -
Stsc91044g00006 222 MobiDBLite consensus disorder prediction 53 67 - -
Stsc91044g00006 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 142 IPR036638 GO:0046983
Stsc91044g00006 222 Gene3D - 75 155 IPR036638 GO:0046983
Stsc91044g00006 222 CDD bHLH_AtILR3_like 72 147 - -
Stsc91044g00006 222 PANTHER BHLH TRANSCRIPTION FACTOR 16 222 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91044g00006 Stsc-Chr91044 33990 37009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91044g00006 40 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 63.043 4.71e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91044g00006 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91044g00006 - - gmx:100789655 285.034