Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91044g00004 ATGGATCTTGTTATAAGAAGACACATGATTTATGTGTCACTGTCATCACAATCAGAATCTATTCCTCCAGCAACAAATCCAGGGACTAATTATTCAATCTTCCACCATTCATCTTCAGGAACAAGCTTCCCAATCATAGCAATTGCCATCATAGGAATAATGGCCACAGCATTCTTGCTAGTAAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACCGAATCGATATCTTGCGCCGCTTCTCTCCTTCCAGAAGGCGCGGGGATGATCCAGCTTTTGCAGTATATGCTAATGGAATACCGGCAGAGCCTCGGGGGCTGGACGAGGCGGTTATAAGGCTAATACCGGTGATTGGTTACAAGAATTCACAGCAGAGCAGCTGCGAATGCGCGGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTGAGGATTATTCCAAATTGCAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAGAACAATGCAAATTGCCCTCTTTGTAGGACAAGCATTTCTTTGACAAGTAGGTTCGACATTGATCAGCTTCTCAACAACAGAATAAGGCCTCTCACAACTCCTTCTTCCTCCTCTTCTTCTTCTTCATCTCCACAACAAGTGATTGAAGATGAAGATTTTGTTGTTATTGAATTGGGTAATGGTAATGGTAATGATGATGATGAGAATGGTTTGGAATCAGCATTACCAAGTAGAGCATGTTCTATTGTTAGTCCTTCACCAAGGAAGAAAGGAATGAAGGTGACAAGCATGGGGGATGAGTGCATTGACATAAGAGGGAACAAAGATGAGAACTTCTCAGTGCAACCAATCAGAAGGTCTTTCTCTATGGACTCTTCAGGGGATAGGAAATTCTATTTGGCAGTTCAACAAGCTTTGCAGCAGAACAACAACAACTCCATTGAAGGGTGCAGTGGTGTAAGTGTAAGTGGAAGTGGAAGAGCTAAGAGATCATTCTTTTCATTTGGATATGGAAGTAGCAGATCCAGAAGTTCTGTGCTACCTGTTGTTTTGGACTCTTGA 1056 0.4223 MDLVIRRHMIYVSLSSQSESIPPATNPGTNYSIFHHSSSGTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRRGDDPAFAVYANGIPAEPRGLDEAVIRLIPVIGYKNSQQSSCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFDIDQLLNNRIRPLTTPSSSSSSSSSPQQVIEDEDFVVIELGNGNGNDDDENGLESALPSRACSIVSPSPRKKGMKVTSMGDECIDIRGNKDENFSVQPIRRSFSMDSSGDRKFYLAVQQALQQNNNNSIEGCSGVSVSGSGRAKRSFFSFGYGSSRSRSSVLPVVLDS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91044g00004 351 SUPERFAMILY RING/U-box 123 179 - -
Stsc91044g00004 351 Pfam Ring finger domain 131 174 IPR001841 -
Stsc91044g00004 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 179 IPR013083 -
Stsc91044g00004 351 CDD RING-H2_EL5-like 131 174 - -
Stsc91044g00004 351 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Stsc91044g00004 351 PANTHER RING-H2 FINGER PROTEIN ATL16 23 347 IPR044600 GO:0016567|GO:0016740
Stsc91044g00004 351 FunFam E3 ubiquitin-protein ligase ATL6 99 180 - -
Stsc91044g00004 351 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91044g00004 Stsc-Chr91044 22911 24161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91044g00004 37 350 C3H Transcription Factor Family AT1G04360 51.130 5.25e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91044g00004 - - gmx:100775286 352.058