Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91044g00003 ATGAATCAAGATGGGTCAAACGGTAGGACAAAGGATGACGGAGGAGATATCCGATATAGAGGTGTGCGCCGCCGTCCTTGGGGGAAGTTCGCAGCCGAGATTCGTGACTCCACTAGGCAGGGTCAGAGGGTTTGGCTTGGTACATTCAACACGGCCGAGGATGCAGCAAGAGCTTATGATAGAGCGGCTTATGCCATGAGAGGTGCATTTGCTATCCTTAACTTCCCAAATGAGTATCCTATGTCGGGTTACGGTAATAACCGCACCTGTGGCGGTGGCAGTGGCGCCTCTTATTCTTCCGGCGCTTCGTCTTCCTCTAGTTCAAGGCAGGGCGAAGTGTTTGAGTTTGAGTATTTGGACGACAAATTGTTGGAGGAGCTTCTTGAATGCGAAGAAAAGAAGAAAAATGGACCATGA 417 0.5012 MNQDGSNGRTKDDGGDIRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEDAARAYDRAAYAMRGAFAILNFPNEYPMSGYGNNRTCGGGSGASYSSGASSSSSSRQGEVFEFEYLDDKLLEELLECEEKKKNGP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91044g00003 138 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Stsc91044g00003 138 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Stsc91044g00003 138 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Stsc91044g00003 138 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Stsc91044g00003 138 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Stsc91044g00003 138 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Stsc91044g00003 138 PANTHER DNA-BINDING DOMAIN 13 133 IPR044808 GO:0003700|GO:0009873
Stsc91044g00003 138 MobiDBLite consensus disorder prediction 84 110 - -
Stsc91044g00003 138 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Stsc91044g00003 138 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Stsc91044g00003 138 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91044g00003 Stsc-Chr91044 13928 14477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91044g00003 13 135 AP2-EREBP Transcription Factor Family AT3G23230 63.492 1.02e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc91044g00003 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91044g00003 - - gmx:100775830 156.762