Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91037g00006 ATGGAGAAGGAGTTAATCGAGCTCTACGATGCCGCTAAGAAGGCCGCCGATGCCGCCAGCTCCGACGACGCTGGCCCTCACGAAGAGTCCCGATGTATCGATGCCCTCAATCAGCTCAAGAAATTCCCCGTCAATTACAAGATTCTCGTCAGCACCCAGGTTGGCAAACATCTTAAACATATCACAAAGCACCCGAGGCAGAAAATTCGGGCATTTGCTGTTGACCTCATTGAGATATGGAAAGACATAATATTAACCGAAACAGGCAGAATAAAGAATGGGGGCTCTGATAACAAAGACTTGGCAAATGGTGATAGAGCTAAATCTGGGAAAATGCAGAAGAGTCCCTCTGTGAAGGTTGAGAAGGTTGAAAATGGTGCATCAAGGCCAATCGCAGCGAAAGTACACCATATGGATCGAAAAATTGAAAAAGATGATCATGCTGCAAATGTCAAGGTGGAAAAGATAGTCAAGGAAGAGAAGCAAGTTTCTGTAGCAAAGAAAATGTCAACAAGCTCAGCTGCTACCCCAAAGCTGAAGACTATGATTAAATCAAATGATGCAGTGAGAGACAAAATAAGGGATCTTCTCCATGAGGCTTTAGCCAAGGTTTCTGGAGAGGCTGAGGAGGATATGGTGGACGAAGTAAATGCTTGCGACCCTATTCGTGTTGCTGTTAAAGTTGAGTCTGTGCTCTTTGAGAAGTGGGGTCCTTCAAATGGGGCCCAAAAGGTCAAGTATAGGTCTCTGATGTTTAACTTGAAGGATCAAAACAACCCAGATTTCCGGAGAAAAGTTCTACTTGGCTATATCGAACCAGAGCGGTTAATCAACATGAGCACGGCTGATATGGCGAGTGAGCAGCGGAAGAAAGAGAACGAGAAGATCTACGAGAAAGCATTGTTTGAATGTGAACGTGGAGGTCCGCCAAAAGCTACGACAGATCAATTCAAGTGTGGTAGATGTGGTCAAAGGAAATGCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACCTATGTCACTTGTACTGTCTGCAGTAACCGTTGGAAGTTCTGTTAA 1074 0.4479 MEKELIELYDAAKKAADAASSDDAGPHEESRCIDALNQLKKFPVNYKILVSTQVGKHLKHITKHPRQKIRAFAVDLIEIWKDIILTETGRIKNGGSDNKDLANGDRAKSGKMQKSPSVKVEKVENGASRPIAAKVHHMDRKIEKDDHAANVKVEKIVKEEKQVSVAKKMSTSSAATPKLKTMIKSNDAVRDKIRDLLHEALAKVSGEAEEDMVDEVNACDPIRVAVKVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGYIEPERLINMSTADMASEQRKKENEKIYEKALFECERGGPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCSNRWKFC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91037g00006 357 ProSitePatterns Zinc finger TFIIS-type signature. 319 354 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc91037g00006 357 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 97 IPR035441 -
Stsc91037g00006 357 FunFam Probable Transcription elongation factor S-II 286 357 - -
Stsc91037g00006 357 Pfam Transcription factor S-II (TFIIS) 317 355 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc91037g00006 357 NCBIfam transcription elongation factor S-II 12 357 IPR006289 GO:0003676|GO:0005634|GO:0006368
Stsc91037g00006 357 ProSiteProfiles TFIIS central domain profile. 189 312 IPR003618 GO:0006351
Stsc91037g00006 357 MobiDBLite consensus disorder prediction 94 125 - -
Stsc91037g00006 357 CDD Zn-ribbon_TFIIS 310 356 - -
Stsc91037g00006 357 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
Stsc91037g00006 357 Pfam Transcription factor S-II (TFIIS), central domain 186 303 IPR003618 GO:0006351
Stsc91037g00006 357 Gene3D - 162 285 IPR036575 GO:0006351
Stsc91037g00006 357 ProSiteProfiles TFIIS N-terminal domain profile. 1 87 IPR017923 -
Stsc91037g00006 357 SMART TFS2_5 8 86 IPR003617 GO:0005634
Stsc91037g00006 357 Pfam TFIIS helical bundle-like domain 35 84 IPR017923 -
Stsc91037g00006 357 SUPERFAMILY Zinc beta-ribbon 298 355 - -
Stsc91037g00006 357 PIRSF TFIIS 2 357 IPR035100 -
Stsc91037g00006 357 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 19 357 - -
Stsc91037g00006 357 SMART Cys4_2 317 356 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc91037g00006 357 ProSiteProfiles Zinc finger TFIIS-type profile. 315 355 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc91037g00006 357 CDD TFIIS_I 28 84 - -
Stsc91037g00006 357 Gene3D - 286 357 - -
Stsc91037g00006 357 SMART mid_6 187 295 IPR003618 GO:0006351
Stsc91037g00006 357 SUPERFAMILY Elongation factor TFIIS domain 2 177 287 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91037g00006 Stsc-Chr91037 36150 38781 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc91037g00006 TFIIS_M 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91037g00006 K03145 - gmx:100811982 534.258