LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91029g00011	ATGTCTGTTGATTCAGCTGAGCATAACGTAAGAGGTGTAGCCACTCATGGTGGACGCTATGTTCAATACAACATCTATGGCAATCTGTTTGAGGTTTCTTCAAAGTATGTCCCTCCTATTCGCCCTATTGGAAGAGGTGCATATGGTATTGTTTGTGCTGCTGTAAATGCCGAGACACGTGAGGAAGTAGCCATTAAGAAGGTTGGGAATGCATTTGACAACAGAATAGATGCCAAAAGAACCTTACGAGAAATCAAGCTTCTTCGGCACATGGATCATGAAAATGTGATGTCCATTAAAGATATTATTCGACCTCCACAGAAGGAGAACTTCAATGATGTGTACATTGTTTCTGAGTTAATGGACACTGATCTGCATCAAATAATACGGTCCAGTCAACCATTGACCGATGATCATTGTCGGTATTTTCTATATCAGTTGTTACGAGGGCTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGATCTAAAGCCTAGCAATTTGCTACTCAATGCCAATTGTGACCTTAAGATTGCAGACTTTGGTCTTGCTAGAACTACATCTGAAACTGATTTTATGACCGAGTATGTGGTTACTCGATGGTACCGAGCTCCGGAGTTGCTTCTTAACTGTTCTGAATATACAGCAGCCATTGATATATGGTCAGTTGGTTGCATACTTGGTGAAATCATGACAAGGCAGCCCCTCTTTCCAGGCAGAGATTATGTTCATCAGCTGAGGCTGATCACAGAGCTGGTAGGTTCTCCTGATGACACCAGCCTCGGATTTCTTCGAAGTGATAATGCTCGTAGATATGTAAAACAACTTCCACAATGTGCAAAGCAAAATTTCTCTGCTAAATTTCCCAATATTTCTGCTGGTGCCATTGATCTGCTAGAGAAGATGCTCATCTTTGATCCAAGCAGACGCATTACAGTTGATGAGGCTTTGTGCCATCCTTACATGGCACCGCTCCATGGTATCAATGAGGAACCTGTTTGTCTAAGACCTTTCAGTTTCGACTTCGAGCAACCGTCATTCACTGAAGAAGACATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCTGATCCACCAATTTACTGA	1116	0.4211	MSVDSAEHNVRGVATHGGRYVQYNIYGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSSQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGRDYVHQLRLITELVGSPDDTSLGFLRSDNARRYVKQLPQCAKQNFSAKFPNISAGAIDLLEKMLIFDPSRRITVDEALCHPYMAPLHGINEEPVCLRPFSFDFEQPSFTEEDIKELIWRESVKFNPDPPIY	371

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc91029g00011	371	CDD	STKc_TEY_MAPK	30	366	-	-
Stsc91029g00011	371	SMART	serkin_6	37	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc91029g00011	371	ProSitePatterns	Protein kinases ATP-binding region signature.	43	67	IPR017441	GO:0005524
Stsc91029g00011	371	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	35	324	-	-
Stsc91029g00011	371	Gene3D	Transferase(Phosphotransferase) domain 1	121	350	-	-
Stsc91029g00011	371	FunFam	Mitogen-activated protein kinase	22	131	-	-
Stsc91029g00011	371	SUPERFAMILY	Protein kinase-like (PK-like)	40	327	IPR011009	-
Stsc91029g00011	371	ProSitePatterns	MAP kinase signature.	72	175	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
Stsc91029g00011	371	FunFam	Mitogen-activated protein kinase	121	350	-	-
Stsc91029g00011	371	ProSiteProfiles	Protein kinase domain profile.	37	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91029g00011	Stsc-Chr91029	34407	37428	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91029g00011	11	366	MAP Kinase Gene Family	AT4G01370	87.360	0.0	676

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Stsc91029g00011		Pkinase	2.2e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91029g00011	K20600		-	gmx:100779469	701.819

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