Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91023g00001 ATGTCTTCAGGGACATCATCCTATTGGTGCTACAGGTGCAGTCGATTTGTCAGGGTATGGACCCACGATACCGTCGTTTGTCCCGACTGCGACGGCGGTTTCGTTGAGGAGATCGACCCTCCTCCTCGCTCCGTCAACCTCGACGCCCGCCGCCGCAGATTCCCCGCAGCAGCCATGTACATGATCGGCCAGCGCCCCCACTCTTCCGCTGACCAAAACACCGACATCACCACCACCAACAACAACAACAATAGCTCTTCCATCAACCGCCACGCCCTCCGCCGGACCCGACGCAACGGCGGCGACCGCTCCCCTTTCAACCCTGTCATCGTCCTCCGTGGCGGAGGCGGATCCTCTGAGTCTCACGAAAACAGCAACGGCGGCGGAGGAGGAGGAGAAGGACGCGGATTCGAGCTGTTCTATGACGACGGCGCCGGTTCGGGGCTGAGACCCTTGCCGGCAAGCATGTCGGAGTTTCTGCTGGGATCCGGGTTCGATCGTCTTCTAGAACAGCTGTCTCAGATCGAGATCAACGGAATAGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCGTTACCGACAATCGAAATCGATGAGAGCCACTTGGAGTTGGAATCGTACTGTGCCGTTTGCAAAGAAGCTTTCGAGATGGGAACTTCGGCCAGGGAGATGCCATGTAAGCATATATACCACCAAGACTGTATATTGCCATGGCTCACACTCCACAATTCCTGCCCAGTTTGCCGCCACGAGTTGCCCTCTGATAACCCCAGCAACAGCAGCGGTTCGCCGTCGTCGTCCGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTTCCCGGTGGGGGATTTGCTGTTGGGAGATTCAATGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTTGTTTATACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCAAGGAGGATTTCTTGGTCTTCTAGAGGGAGTCGAGGGAGGCAGAGTGGTGCTTTTCAGAGGTTTTTTAGAAGTTTGTTTGGTTGCTTCAGTGGTGGTGACAATGGTAGGGAGTCTCGGTCCATTAGGGGGAGCTCCTCGACCTCGCGGTCTCGAATGATGGATCATTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 1209 0.5567 MSSGTSSYWCYRCSRFVRVWTHDTVVCPDCDGGFVEEIDPPPRSVNLDARRRRFPAAAMYMIGQRPHSSADQNTDITTTNNNNNSSSINRHALRRTRRNGGDRSPFNPVIVLRGGGGSSESHENSNGGGGGGEGRGFELFYDDGAGSGLRPLPASMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLELESYCAVCKEAFEMGTSAREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPSNSSGSPSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFNGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGRQSGAFQRFFRSLFGCFSGGDNGRESRSIRGSSSTSRSRMMDHSPHSRRTWSMDVNSGMRSW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91023g00001 402 MobiDBLite consensus disorder prediction 66 137 - -
Stsc91023g00001 402 MobiDBLite consensus disorder prediction 66 90 - -
Stsc91023g00001 402 Pfam Ring finger domain 211 253 IPR001841 -
Stsc91023g00001 402 SMART ring_2 212 252 IPR001841 -
Stsc91023g00001 402 MobiDBLite consensus disorder prediction 362 402 - -
Stsc91023g00001 402 MobiDBLite consensus disorder prediction 365 380 - -
Stsc91023g00001 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 257 - -
Stsc91023g00001 402 MobiDBLite consensus disorder prediction 257 276 - -
Stsc91023g00001 402 FunFam E3 ubiquitin-protein ligase RING1-like 174 259 - -
Stsc91023g00001 402 SUPERFAMILY RING/U-box 192 259 - -
Stsc91023g00001 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 259 IPR013083 -
Stsc91023g00001 402 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Stsc91023g00001 402 Pfam Protein of unknown function (DUF1117) 283 382 IPR010543 -
Stsc91023g00001 402 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Stsc91023g00001 402 CDD RING-H2_RNF126-like 212 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91023g00001 Stsc-Chr91023 1826 3034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91023g00001 151 266 C3H Transcription Factor Family AT5G01980 41.379 1.38e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91023g00001 K11982 - gmx:100807324 543.117