Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91020g00004 ATGAAATTCCTGAGCGAAGCAACTTCAGCAGCGGAACGCATAAGGCAAGTCATAGATAGAATTCCAAACATTGATTCCGACAACGACGGAAAAATCCTCGGAAGCATTCGAGGGGAAGTAGAATTCCAAAACGTGGATTTCGCATACCCGTCGAGGCCAGAGACAATTGTTTTGAACGGTTTTTGCCTCAAGATTCCGGCGGGGAAGACGGTGGCATTGGTGGGAGAGAGTGGTTCTGGAAAATCCACCATCATTGCACTCTTGCAAAGGTTTTATGATCCTCTTCGAGGGGAAATCAAATTTGATGGTGTTACCATTAATAAGTTGCAGCTTAAGTGGCTAAGATCCCAGATGGGATTGGTGAGTCAAGAGCCGGCACTATTTGCAACCAGCATCAAAGAGAACATACTGTTTGGGAAGGAAGATGCAACAGAAGCTGAAGTGATTGAGGCTGCAAAAGCTTCCAATGCTCATAATTTTATTTCCATGCTTCCTCAGGGCTATGAAACCCAGGTGGGTGAGAGAGGAACTCAAATGTCAGGTGGACAAAAACAAAGAATTGCAATTGCTAGGGCAATAATCAAGAAGCCAAGAATGCTTCTTCTTGATGAAGCAACCAGCGCACTTGATTCCCACTCGGAGCAAATTGTCCAAAGAGCCCTCGACCAAGTGTCCATTGGCTGCACCACCATCGTTGTCGCCCACCGCCTTTCCACGATTCGCAATGCCGACGTGATCGTGGCCATGCGAGCTCGAAAGGTGGTGGAGATGGGCAGTCACAACGAACTCCTCTTGAATCATGATGGACTCTACTCCTCCATGGTTCGTCTCCAACAAACTGATAAATCAGAAACAGAATCTGTAACTGCCCCAACAACTCCTGGTACTGGTAGTGTTGATGATCCTTCTTCTGTTTCGGCGGCTAGTGACATCGCTGATGTCGTTGATGATGATGATCACCATCGATGTTTCACTCATACAGATGACGACAACATTAAAAAGTCGGAGGAAGAAAAAAAGGAGGAGGAGGAGAACAAGAATACGAGCGCATCGTTCTGGAGACTGATTCGATTGAACCTTCCAGAGTGGAAGCAAGCAGTTATAGGTTCTTTGAATGCCATGGTGTTCGGCGGTGTTCAACCGGCGTACACTATGGTTATGGGGTCGATGATATTCGTGTATTTCGATAGCGATCATGAAGAGATAAAGAGGAAGACTAGGGTTTACTCGGTTTGCTTCTTGGGACTTTTTCTCTTGTCTTTGATTGTCAACATTTTGCAGCATTATAGCTTTGCTTATATGGGAGAGTGCTTGACCAAAAGGATTAGAGAAACCATGTTTGCAAAGATTCTCACCTTTGAAATTGCTTGGTTTGATCGTCATCAAAATTCTACTGCTGCTGTTTGCTCTAGGCTAGCCAAGGATGCAAATCTCGTGAGATCTTTAGTTGGAGACAGGATTGGTTTGGTGGTTCAGACAGTATCAGCAGTGGTAACAGCTTTCACTTTGGGTTTGGTCATTGCATGGAGACTCGCCATTGTTATGATATGTGTTCAGCCCCTTATGGTCGCATGCTTCTATACAAAGCGTGTCCTTATCAAGACCATGTCCAAAAAGGTTGCCAAAGCGCAAGAAGAAAGTAGCAAGCTTGCAGCCGAAGCCCTTTCAAACCTACGAACAATCACAGCATTTTCTTCTCAAAACCGAATCTTGAAGATGCTTGAAAATGCTCAAGAAGGACCAAGACGGGAGAATCTCCGGCAATCGTTTTACGCCGGAATCGGCCTTGCATGTTCCCAAGCCATAACAACTTGTGCCATGGCTCTTAACTTTTGGTACGGTGGCCAATTGGTGGCTCATGGCCACATCACCACAAAAGCATTGTTTCAAAGCTTCATGGTTATTGTCAGCACGGCTAGAGTCATCGCCGACGCCGGCAGCATGACATCCGACCTCGCCAAAGGCGTCGACGCGGTGAGCTCCATTTTCGCTGTCTTAGACAGGACAACAAAGATCTCCGCGGAGAGCCAAAACAGTCACAAGCCCGAACACATAATGGGAAAAGTAGAATTCCAAGACGTGTATTTTGCTTACCCGACTAGACCAAACGTCACTATCTTCAAATCCTTTACGATGAGAATAGAATCCGGAAAGTCAACGGCATTGATTGGTCAAAGCGGATCTGGAAAGTCAACGATTATAGCTCTAATTGCAAGATTCTATGATCCTCTAGAAGGGTACGTAACAATCGACAATATGAATGTAAAGTCATACAATTTGAAAGAACTAAGGAGGCACATTGCAATTGTGAGTCAAGAACCAACATTGTTCAATGGAACCATAAGAGAGAACATTGCTTATGGATCTAACGGCGTTAATGAGTCAGAGATCATAGAGGCATCAAAATTGGCCATGGCACATGATTTTGTAACGGCGTTGAAGGACGGTTATGACACGTGGTGTGGTGAGAAGGGGTTACAGCTTTCAGGGGGTCAAAAGCAAAGAATAGTGATAGCAAGGGCTATATTGAAAAATGCAAGAGTTTTGTTGTTGGATGAGGCAACAAGTGCACTTGATATGAAATCTGAGAAGGTGGTTCAGGAAGCACTAGAGAGGGCTATGGTGGAGAGGACCAGCGTGATCGTGGCGCATAGGTTGTGTACCATAAAGAAGTGCGATGTTATTGCTGTTTTGGAGAAGGGGAAGGTTGTGGAAAGTGGGACCCACTCTTCTTTGATGGCTAAAGGAACTTCTGGAGCTTATTTCAACTTTGTTACTCTTCAAACTACTACTGCAACTAATTAA 2805 0.4503 MKFLSEATSAAERIRQVIDRIPNIDSDNDGKILGSIRGEVEFQNVDFAYPSRPETIVLNGFCLKIPAGKTVALVGESGSGKSTIIALLQRFYDPLRGEIKFDGVTINKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEAEVIEAAKASNAHNFISMLPQGYETQVGERGTQMSGGQKQRIAIARAIIKKPRMLLLDEATSALDSHSEQIVQRALDQVSIGCTTIVVAHRLSTIRNADVIVAMRARKVVEMGSHNELLLNHDGLYSSMVRLQQTDKSETESVTAPTTPGTGSVDDPSSVSAASDIADVVDDDDHHRCFTHTDDDNIKKSEEEKKEEEENKNTSASFWRLIRLNLPEWKQAVIGSLNAMVFGGVQPAYTMVMGSMIFVYFDSDHEEIKRKTRVYSVCFLGLFLLSLIVNILQHYSFAYMGECLTKRIRETMFAKILTFEIAWFDRHQNSTAAVCSRLAKDANLVRSLVGDRIGLVVQTVSAVVTAFTLGLVIAWRLAIVMICVQPLMVACFYTKRVLIKTMSKKVAKAQEESSKLAAEALSNLRTITAFSSQNRILKMLENAQEGPRRENLRQSFYAGIGLACSQAITTCAMALNFWYGGQLVAHGHITTKALFQSFMVIVSTARVIADAGSMTSDLAKGVDAVSSIFAVLDRTTKISAESQNSHKPEHIMGKVEFQDVYFAYPTRPNVTIFKSFTMRIESGKSTALIGQSGSGKSTIIALIARFYDPLEGYVTIDNMNVKSYNLKELRRHIAIVSQEPTLFNGTIRENIAYGSNGVNESEIIEASKLAMAHDFVTALKDGYDTWCGEKGLQLSGGQKQRIVIARAILKNARVLLLDEATSALDMKSEKVVQEALERAMVERTSVIVAHRLCTIKKCDVIAVLEKGKVVESGTHSSLMAKGTSGAYFNFVTLQTTTATN 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91020g00004 934 MobiDBLite consensus disorder prediction 280 305 - -
Stsc91020g00004 934 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 689 925 IPR003439 GO:0005524
Stsc91020g00004 934 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 276 IPR003439 GO:0005524
Stsc91020g00004 934 Gene3D ABC transporter type 1, transmembrane domain 1 283 IPR036640 GO:0005524|GO:0016020
Stsc91020g00004 934 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 395 923 IPR039421 -
Stsc91020g00004 934 Pfam ABC transporter 708 856 IPR003439 GO:0005524
Stsc91020g00004 934 FunFam ABC transporter B family member 4 30 285 - -
Stsc91020g00004 934 SMART AAA_5 716 888 IPR003593 GO:0016887
Stsc91020g00004 934 SMART AAA_5 67 261 IPR003593 GO:0016887
Stsc91020g00004 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 928 IPR027417 -
Stsc91020g00004 934 FunFam Putative ABC transporter B family member 8 330 677 - -
Stsc91020g00004 934 Pfam ABC transporter transmembrane region 373 638 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91020g00004 934 Pfam ABC transporter 59 207 IPR003439 GO:0005524
Stsc91020g00004 934 FunFam ABC transporter B family member 4 679 933 - -
Stsc91020g00004 934 CDD ABC_MTABC3_MDL1_MDL2 689 928 - -
Stsc91020g00004 934 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Stsc91020g00004 934 Gene3D - 679 933 IPR027417 -
Stsc91020g00004 934 SUPERFAMILY ABC transporter transmembrane region 354 667 IPR036640 GO:0005524|GO:0016020
Stsc91020g00004 934 Coils Coil 533 553 - -
Stsc91020g00004 934 CDD ABC_6TM_Pgp_ABCB1_D2_like 356 672 - -
Stsc91020g00004 934 Gene3D ABC transporter type 1, transmembrane domain 331 677 IPR036640 GO:0005524|GO:0016020
Stsc91020g00004 934 CDD ABC_MTABC3_MDL1_MDL2 40 278 - -
Stsc91020g00004 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 278 IPR027417 -
Stsc91020g00004 934 Gene3D - 30 279 IPR027417 -
Stsc91020g00004 934 ProSitePatterns ABC transporters family signature. 828 842 IPR017871 GO:0005524|GO:0016887
Stsc91020g00004 934 MobiDBLite consensus disorder prediction 322 346 - -
Stsc91020g00004 934 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 373 654 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91020g00004 Stsc-Chr91020 33935 39014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91020g00004 14 933 Calmodulin-binding Proteins AT2G36910 44.898 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91020g00004 K05658 - gmx:100807709 1223.38