Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91020g00003 ATGGGTTTTGGTGTAATTGGAGCCATTGGTGAAGGTTCCACCACTCCTCTTGTGCTCTACCTTAGTAGCCTCATTATGAACAAAATGGGCACTTTTTCTACCATGTCAATACCTACTTTTCTCCATTGCATCAACAAGGTTGCGGTGTCTTGGTTATATTTGGCTGCTGGAACATTCCTTGTTAACTTCCTCAAGGGTTATTGTTGGACAAGAACAAGTGAGAGACAAGCAGCAAGAATGAGAGGAAAGTACCTGAAAGCAGTGATGAGACAAGAAGTTGCATATTTTGATCTGAATGTGACAAGCACTTTTGATGTTATCATTAGCGTATCCAATGACACCCTCCTCATTCAGGATGTTATTAGTGAGAAGGTACCAAATTTATTGGTGAACATTTCATGGTTCATTGGGAGCTACATAGCTAGTTTTGCAATGTTATGGAGATTGGCCATAGTAGGGATCCCATTCACAATTCTTCTTATAATCCCTGGCTTCATTTATAGCAAGACATTAATGGGATTAGCAAGAAAAATGAGAGAAGAGTATAACAAAGCAGGTGCAATAGCTGAACAAGCAATATCTTCAATAAGAACAGTGTATTCATATGTGGGGGAAAATGAGACCATAAATGCATTCTCTAATGCTCTTGAAGGGTCAATGAGTTTGGGAATTAAACAAGGGTTGGCAAAAGGTTTAGCCATTGGAAGCAATAATGGTATTGTTTTTGGAATATGGTCTTTTATGTGCTATTATGGTAGCAGATTGGTCATGGACCATGGTGCTAAAGGAGGCACAGTTTTCTCAGCTGGAACAGCTATCACTGCTGCTGGATTGTAA 837 0.3955 MGFGVIGAIGEGSTTPLVLYLSSLIMNKMGTFSTMSIPTFLHCINKVAVSWLYLAAGTFLVNFLKGYCWTRTSERQAARMRGKYLKAVMRQEVAYFDLNVTSTFDVIISVSNDTLLIQDVISEKVPNLLVNISWFIGSYIASFAMLWRLAIVGIPFTILLIIPGFIYSKTLMGLARKMREEYNKAGAIAEQAISSIRTVYSYVGENETINAFSNALEGSMSLGIKQGLAKGLAIGSNNGIVFGIWSFMCYYGSRLVMDHGAKGGTVFSAGTAITAAGL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91020g00003 278 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 278 - -
Stsc91020g00003 278 PANTHER ABC TRANSPORTER B FAMILY 1 276 IPR039421 -
Stsc91020g00003 278 Pfam ABC transporter transmembrane region 2 267 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91020g00003 278 Gene3D ABC transporter type 1, transmembrane domain 3 278 IPR036640 GO:0005524|GO:0016020
Stsc91020g00003 278 SUPERFAMILY ABC transporter transmembrane region 2 273 IPR036640 GO:0005524|GO:0016020
Stsc91020g00003 278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 3 278 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91020g00003 Stsc-Chr91020 30865 33186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91020g00003 1 278 Calmodulin-binding Proteins AT2G36910 33.453 3.80e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91020g00003 K05658 - gmx:100809399 405.216