Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91020g00002 ATGCTACCTAGGACAAGTGTTGATGGCTTTCGTGTTAGCGTGTCAAGTACACCTAGCTGTTCGAGTGGGGGATCGGGAACAGAAGACATCGAATCCCTGGGTGATCTTTATATATGGGGACAAATTTGGGCAGATGTTTCATTTGAAGGCTTTGGGCCTCAGCCCCCTCCCCTGACTGATGTTCTGATTCCTAAGCCCTTAGAGGCAAATATTGTTCTTGATGTTCAACAAATTTCATCTGGTGTCCGGCACATTGCTTTAGTAACAAGGCAAGGTGAGGTTTTCACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGAATCGATAAAGATTTTGGACAACCCCATGTTGTTGAATTCTTGGCTGTTACTAATGTGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTCTAACTACATCAGATGAGCTATATTCTTGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGCTAGCCATTGGTTACCAAAGAGAGTTAGTGGCCCTCTAGAAGGACATCAAGTTATATCTGTTGCTTGTGGCACATGGCATTCAGCTTTGGCAACTGCCAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTGTTAGGCCATGGAGATAGAGAGAGTGTGCTATATCCAAAGGAGGTGCAATTATTAAGTGGATTGAGGACTCTTAATGTTGCATGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTAACACTTCAGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATAAGTACCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCAACATGTGTCTCGTCGCTTATAGAATTAAATTTCCACCAGATAGCGTGTGGACACACTATGACTGTTGCCCTCACTACATCAGGTCATATCTTCACCATGGGAGGCACTGAACATGGCCAACTAGGAAATCCTCTATCTGATGGAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTAGCTGTATTGACTTCAAGAAGTGAACTATATACATGGGGAAAAGGTGCCAATGGAAGATTGGGACATGGAGACACTGATGATAGGAAGGGTCCAACAATAGTGGAAGCCTTGAAAGAAAGGCATGTGAAAAATATTTCATGTGGATCAAAGTTTACGGCTTGCATATGTGTCCATAAATGGGTCTCAGGAGTTGATCAATCCAGTTGCACTGCATGTAGGCAACCATTTGGATTTACAAGAAAAAGGCACAACTGTTACAATTGTGGTCTGGTGCATTGCCATGGTTGTAGTTCCAAAAAGGCATTGAGGGCGGCGTTGGCTCCAACGCCCGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGCAGAGTCCAGTTCTGGTTCAAATTTTACCAGGAGAGCAACTACTCCACCTCGTACTTCCATAGACGGAAGGGAAAGATTTAGCATGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTTGTGCAATTGAAAGATGTTGCATTTCCAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCACTGCCGTACCTCCAACTCCAACTCCACCACCAACTCCACCACTCATTTCAAGGCCGGCATCCCCATATGCCAGAAGGCCTAGCCCTCCGCGTTCCAACACCGGTGGATTTTCTAGAAGTCTCATTGATAGTTTGAGGAAAACAAATGAGCTTCTGAACCAAGAAGTGTCGAAATTGCAGAGACAAATTCAAAGTTTGAAACAGAGAAGTGACATGAGAGACGTGGAAAATCAGAGGCTTCGCAAAAATTTAAAGGAAGCTACAACAGTTGCTGCAGATGAGTCTTCTAAGCATAAAGCAATGGGAGAAATTTTTGAGTCCACCATTGTTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGACATTCCAGAAACTGAAAATTTGAGAAGTGCACTTACTGAAGCTGAAGATTTTCTAAAAGAAAATTCAGCAATGGAAACATTTTCTGCACCATCGATATCAGAGTCTACTCGACAAAATGCACCTAACAAACCTGCCTCGGATAGTGAGAATTCAAAAATGCAAGATCACGGTTATGAAGAAAATCAAGATGTGACAGCTTCTGACCCATCTAATGATGAGGGGAATGTCCTTGAAGAAAGAAATGGATCATCTTTATCTGATAATCAAACAACAGTGCAACCACAAAGCTCAGAAAACAATTCAAGGTCATTAGAGACAACAAGGTTGGGAAGAGATGGAGAAACACAAGTCGTTGAACAATTTGAGCCTGGTGTATATGTGACACTAGTAGTAAAGCCTAATGGTGCCAAAATTTTCAAGAGAGTTAGATTCAGCCGGAGAAGGTTTCAAGAGCAACAGGCAGAAGAATGGTGGAGCAAAAACAAAAAAAGGGTGCTTAGGAAATATGATCCACAAGGTAAAAATCAAGCTAATGCATCATCTAGCACCCCAGCACCCCCTACTGAAGAAAATATTGAGGCAGCACCTACCTAG 2658 0.4259 MLPRTSVDGFRVSVSSTPSCSSGGSGTEDIESLGDLYIWGQIWADVSFEGFGPQPPPLTDVLIPKPLEANIVLDVQQISSGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDFGQPHVVEFLAVTNVDFVACGENHTCALTTSDELYSWGDGAYNVGLLGHGTDASHWLPKRVSGPLEGHQVISVACGTWHSALATANGKLFTFGDGTFGVLGHGDRESVLYPKEVQLLSGLRTLNVACGVWHTAAIVEVTLQSSSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIELNFHQIACGHTMTVALTTSGHIFTMGGTEHGQLGNPLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTSRSELYTWGKGANGRLGHGDTDDRKGPTIVEALKERHVKNISCGSKFTACICVHKWVSGVDQSSCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNAESSSGSNFTRRATTPPRTSIDGRERFSMGEIRSSRTLFPLSRIHKTTTEQVVQVPSLVQLKDVAFPSSTGSIMQNLLKPTITAVPPTPTPPPTPPLISRPASPYARRPSPPRSNTGGFSRSLIDSLRKTNELLNQEVSKLQRQIQSLKQRSDMRDVENQRLRKNLKEATTVAADESSKHKAMGEIFESTIVQLKQMAEKLPPDIPETENLRSALTEAEDFLKENSAMETFSAPSISESTRQNAPNKPASDSENSKMQDHGYEENQDVTASDPSNDEGNVLEERNGSSLSDNQTTVQPQSSENNSRSLETTRLGRDGETQVVEQFEPGVYVTLVVKPNGAKIFKRVRFSRRRFQEQQAEEWWSKNKKRVLRKYDPQGKNQANASSSTPAPPTEENIEAAPT 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 312 IPR000408 -
Stsc91020g00002 885 Coils Coil 608 635 - -
Stsc91020g00002 885 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 483 IPR017455 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 568 592 - -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 9 27 - -
Stsc91020g00002 885 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 671 - -
Stsc91020g00002 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 490 IPR013083 -
Stsc91020g00002 885 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 715 736 - -
Stsc91020g00002 885 Gene3D - 257 429 IPR009091 -
Stsc91020g00002 885 SUPERFAMILY RCC1/BLIP-II 33 418 IPR009091 -
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Stsc91020g00002 885 Coils Coil 643 663 - -
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 751 794 - -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 838 858 - -
Stsc91020g00002 885 CDD FYVE_like_SF 426 479 - -
Stsc91020g00002 885 SMART fyve_4 415 484 IPR000306 GO:0046872
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 567 605 - -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 263 309 IPR000408 -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 198 247 IPR000408 -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 144 194 IPR000408 -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 366 413 IPR000408 -
Stsc91020g00002 885 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 1 27 - -
Stsc91020g00002 885 Pfam Transcription factor regulating root and shoot growth via Pin3 803 857 IPR013591 -
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Stsc91020g00002 885 FunFam PH, RCC1 and FYVE domains-containing protein 1 5 252 - -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 94 110 IPR000408 -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 360 381 IPR000408 -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Stsc91020g00002 885 PRINTS Chromosome condensation regulator RCC1 signature 302 320 IPR000408 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 715 803 - -
Stsc91020g00002 885 SUPERFAMILY FYVE/PHD zinc finger 417 491 IPR011011 -
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Stsc91020g00002 885 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Stsc91020g00002 885 Pfam FYVE zinc finger 417 483 IPR000306 GO:0046872
Stsc91020g00002 885 ProSiteProfiles BRX domain profile. 803 858 IPR013591 -
Stsc91020g00002 885 Gene3D - 155 251 IPR009091 -
Stsc91020g00002 885 Gene3D - 5 154 IPR009091 -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 838 885 - -
Stsc91020g00002 885 MobiDBLite consensus disorder prediction 861 876 - -
Stsc91020g00002 885 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91020g00002 Stsc-Chr91020 21608 25123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91020g00002 797 864 Major Intrinsic Protein MIP AT1G31880 38.235 4.90e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91020g00002 - - ahf:112742992 1565.82