Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91018g00001 ATGGCTCCTCCTTCTTCTGATATCAACCATCTTTCACACCCTTGCATATATGGGGATTTTGTTTCTTCATATGCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGATCATCAAGTAGAGGAAGGAGTGATAGTAGTAGTGGTCGTCACCTACAGCAGCCTGCAGAGGAAAACATGGTTTGGAGAGCACCGCCATCTAGATCCCGGAAGGATGAAGAGGATTTGAACCGAGAAATTACACTTTCTTTAGGTGAAAATTTCAAGAGACCAAATGGTTATAGATGGCACACAGGCAGTGATGATATGCACTCATCTTCACATCCTCCATATACACCTGCACCTTTATATCCCCGTGGATACAGTTTGGCAAATGTAAGAATATGTGGAGGGTGCAATCAGGAGATACTATATGGAAATTGTTTGGGATGGATGGATACTTACTTTCATCCTGATTGCTTCCGGTGTCACTCGTGTCGCCACCCCATTACTGAACGTGAGTTTTCTTTGTCAGGTAGCCGTCCATATCACAAGACTTGTTTTAAAGAGTTAACCCACCCTAAGTGTGAAGTTTGCCATCAATATATTCCAATAAATGCAGCTGGTTTGATTGAGTATAGGTGCCACCCATATTGGTACCAAAAGTATTGTCCATCACATGAGTATGATAATACAGCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCGCGGAACGAAAAGTATTATAGACTGGACGATGGACGGATTCTGTGCTTCGAGTGCATGGAGTCTGCTATAACGGATACCGGTGAATGCCAGCCTCTATACCATGCCATCAGAGATTATTATGAAGGGATGAACATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTTGGGAGAGATGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGTTTCCATCATTTGCCTGAAACAAGGGGTTTGTGCCTCTCAGAAGAGCAAACTGTCACCAGTGTACATAGATGGCCAAGAATGGGAGGGCATAGATTCATAGGGATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTAGCCCATGAGTTGATGCATGCTTGGTTAAGACTTAAAGGTTACCGGAACCTCGATGCGGAAGTAGAGGAAGGTATTTGTCAGGTTCTATCATACATGTGGCTTGAGTCAGAAGTGATGCCAGGGTCTAGTAGATACATGCCATCAACTTCATCAGCATCTTCATCTTCTTCTTACTCCACATCATCATCATCAAAGAAAGGAGCAAGGTCTCAAGTGGAGAACAAGCTAGGAGAGTTTTTCATGAACCAGATAGCCAATGATTCTTCACCAGCATATGGAGGTGGGTTCAGGTCTGCAATTGAAGCAGTTAATAAGTATGGTTTGCGTTGTACCTTGGACCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1506 0.425 MAPPSSDINHLSHPCIYGDFVSSYAERKSGFMKWFGKIFKIGSSSRGRSDSSSGRHLQQPAEENMVWRAPPSRSRKDEEDLNREITLSLGENFKRPNGYRWHTGSDDMHSSSHPPYTPAPLYPRGYSLANVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGSRPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRFIGMRTQHQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDAEVEEGICQVLSYMWLESEVMPGSSRYMPSTSSASSSSSYSTSSSSKKGARSQVENKLGEFFMNQIANDSSPAYGGGFRSAIEAVNKYGLRCTLDHIRLTGHFPL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91018g00001 501 Pfam LIM domain 134 187 IPR001781 -
Stsc91018g00001 501 Pfam Protein DA1 283 496 IPR022087 -
Stsc91018g00001 501 MobiDBLite consensus disorder prediction 422 445 - -
Stsc91018g00001 501 CDD LIM_DA1 134 186 - -
Stsc91018g00001 501 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 217 - -
Stsc91018g00001 501 FunFam Protein DA1-related 2 122 187 - -
Stsc91018g00001 501 MobiDBLite consensus disorder prediction 44 59 - -
Stsc91018g00001 501 ProSiteProfiles LIM domain profile. 132 192 IPR001781 -
Stsc91018g00001 501 ProSitePatterns LIM zinc-binding domain signature. 134 168 IPR001781 -
Stsc91018g00001 501 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 159 - -
Stsc91018g00001 501 Gene3D Cysteine Rich Protein 124 191 - -
Stsc91018g00001 501 PANTHER PROTEIN DA1-RELATED 2 34 500 IPR045218 -
Stsc91018g00001 501 SMART lim_4 133 185 IPR001781 -
Stsc91018g00001 501 MobiDBLite consensus disorder prediction 43 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91018g00001 Stsc-Chr91018 3501 6284 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91018g00001 DA1-like 1.1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91018g00001 - - gmx:100798829 855.129