Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91017g00006 ATGGATGTTATGAATTACTCGATCGTTTCTGAATCTTCTTCTGAAATAGATTCGACAATCCAGCTTTTAGGTGACGTCGTTGAGGAGTATATTCCAAAGGTTGGAATGACTTTTCCAACACTTGAAGAAGATGCTGCTTTCTGCAAAGAGTATGCTAAACGTGTTGGGTTTTCTACTAAGACAAGGAACACCAATAGGTGCAAGGAGACCAAGGAAATAAAGAATCAACTCATTACATGTAATAGAGAGGGGAAATGGATTTCTGAGATACCATATGTTGAGAAGACGAATCCTACGTGTGGTGCAAACTGTCCTGCGAGGATTTATGTGCATGTAGTGAAGAAAACAAGACGTTGGTGCATTTCAAAGGTTCTTCTTCATCATTCACATCCATTTGCCCTGAATAATCTCAGATGTTGCCTCAGCATAGGGAGCTAA 438 0.3995 MDVMNYSIVSESSSEIDSTIQLLGDVVEEYIPKVGMTFPTLEEDAAFCKEYAKRVGFSTKTRNTNRCKETKEIKNQLITCNREGKWISEIPYVEKTNPTCGANCPARIYVHVVKKTRRWCISKVLLHHSHPFALNNLRCCLSIGS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91017g00006 145 Pfam FAR1 DNA-binding domain 47 132 IPR004330 -
Stsc91017g00006 145 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91017g00006 Stsc-Chr91017 44071 44853 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc91017g00006 FAR1 4.5e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91017g00006 - K17604 aip:110271906 139.813