LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91016g00010	ATGGCGGACGTGGTTCCGAAGCAGCACATGAATAGCCCTACAACAACCAACAAAAAAGAGTCACAGTCGTCGTCGTCGTCATCGAGCCTCCTTCTAGGTCGATTTGAGGTCGGAAAACTCCTAGGCCATGGAACATTCGCGAAGGTGTATTGCGCAAAGAACGTGAAAACCGGAGAATGGGTGGCAATAAAGGTGATCGACAAAGAGAAGATCCTAAAAGGAGGCCTGGTGGCGCACATCAAGCGCGAGATCTCAATCCTCCGCCGCGTCCGCCACCCTAACATCGTTCAGCTCTTCGAGGTAATGGCCACCAAAACCAAAATCTACTTCGTCATGGAATACGTCCGCGGCGGCGAGCTTTTCAACAAGGTCGCCAAAGGAAGGCTCAAAGAAGAAGTCGCTAGAAAGTATTTCCAGCAATTAATCTCCGCCGTCGGATTCTGTCACGAGAGAGGCGTCTACCACCGCGACCTCAAACCTGAGAATCTCCTCCTCGACGAGAACGGTAACCTTAAGGTCTCCGATTTCGGCCTCAGCGCCGTCTCCGATCAAATTCGCCAGGACGGTTTGTTCCACACGTTCTGCGGAACTCCGGCGTACGTCGCACCGGAGGTTCTCGGCCGGAAGGGATACGACGGCGCGAAAGTTGATCTGTGGTCATGCGGTGTCGTTTTGTTCGTTCTGATGGCAGGGTACTTGCCGTTTCACGATCAGAACGTGATGCAGATGTATAAGAAGATCTACAAAGGCGAATTCCGGTGCCCTAGGTGGTTCTCCCCTGATCTCGCCAAGCTCCTCACCAGGCTCCTGGACACTAAGCCGGAAACGCGGATCGCCATTCCCGAAATCATGGAGAACAAGTGGTTCAAGAAAGGATTCAAGCAGATCAAGTTCTACGTTGAAGACGATAGGCTCTGTAGCTTAGATGATGCTGAAAACATGATCATGGAGGATCATAATGTCAATAACATTCTCAGCAGTAATCATCCTTCTACCAACAGCATCATTGGCAATAATAACATCGCAGACGATGAAACTGGTTCTGTATCGGATTATGCAGTTTCTGAATCTGACTCTGAGTTTGAGACGAAGAGAAGGCATAGCGTTAGCAGTGGTGCTTTGCCTCGGCCTGCGAGTTTGAATGCTTTCGATATCATATCGTTTTCGAAGGGATTCGATCTGTCTGGATTGTTCGAAGAGAAAGGGGACGAAGCTAGGTTTGTGACTTCGGCACCGGTTGGGAAGATTATATCGAAATTGGAGGAGATTGCACACTTGGTTAGATTCTCAGTGAGGAAGAAGGATTGCAGGGTGAGCTTGGAAGGAACAAGAGAAGGTGTGAGAGGTCCATTGACGATTGCTGCTGAGATATTCGAGTTGACACCAACGCTTGTGGTGGTTGAGGTGAAGAAGAAAGGAGGGGACAGAGCAGAGTATGAGAAGTTCTGCAACAATGAATTGAAGCCTGGGTTGATGAATTTGATGAAGGAGGAAGAATCATGTTCTTCATCAAGTTTAAGTAGTGTTAATGCTTCTCCTGCAAATGGAATTAGCATCGGTTCTGGTTCTTCTTCATCTTCTCATCATCATCAACCTTCATTGCTACGTGTGCTTTCAGAACCTGCACATAAGATATCTGCTGCTTTGGCTGAGTCTGCTGAGTATGTACCTTCATCATCAGAGGCTTAA	1689	0.4843	MADVVPKQHMNSPTTTNKKESQSSSSSSSLLLGRFEVGKLLGHGTFAKVYCAKNVKTGEWVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHERGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLGRKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMQMYKKIYKGEFRCPRWFSPDLAKLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCSLDDAENMIMEDHNVNNILSSNHPSTNSIIGNNNIADDETGSVSDYAVSESDSEFETKRRHSVSSGALPRPASLNAFDIISFSKGFDLSGLFEEKGDEARFVTSAPVGKIISKLEEIAHLVRFSVRKKDCRVSLEGTREGVRGPLTIAAEIFELTPTLVVVEVKKKGGDRAEYEKFCNNELKPGLMNLMKEEESCSSSSLSSVNASPANGISIGSGSSSSSHHHQPSLLRVLSEPAHKISAALAESAEYVPSSSEA	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91016g00010	562	FunFam	Non-specific serine/threonine protein kinase	377	495	-	-
	Stsc91016g00010	562	ProSitePatterns	Protein kinases ATP-binding region signature.	41	64	IPR017441	GO:0005524
	Stsc91016g00010	562	MobiDBLite	consensus disorder prediction	8	27	-	-
	Stsc91016g00010	562	CDD	CIPK_C	381	491	-	-
	Stsc91016g00010	562	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	153	165	IPR008271	GO:0004672\|GO:0006468
	Stsc91016g00010	562	Pfam	Protein kinase domain	35	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91016g00010	562	Gene3D	Kinase associated domain 1, KA1	375	496	-	-
	Stsc91016g00010	562	FunFam	Non-specific serine/threonine protein kinase	26	114	-	-
	Stsc91016g00010	562	FunFam	Non-specific serine/threonine protein kinase	25	326	-	-
	Stsc91016g00010	562	Gene3D	Transferase(Phosphotransferase) domain 1	25	366	-	-
	Stsc91016g00010	562	Pfam	NAF domain	377	433	IPR004041	GO:0007165
	Stsc91016g00010	562	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc91016g00010	562	ProSiteProfiles	NAF domain profile.	375	399	IPR018451	GO:0007165
	Stsc91016g00010	562	ProSiteProfiles	Protein kinase domain profile.	35	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91016g00010	562	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	21	489	-	-
	Stsc91016g00010	562	SMART	serkin_6	35	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91016g00010	562	SUPERFAMILY	Protein kinase-like (PK-like)	31	290	IPR011009	-
	Stsc91016g00010	562	CDD	STKc_SnRK3	34	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91016g00010	Stsc-Chr91016	26681	28838	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91016g00010	10	512	CBL-interacting serine-threonine protein kinases	AT4G18700	71.173	0.0	738

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc91016g00010		Pkinase	7.3e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91016g00010	-		-	adu:107468323	935.25