Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91016g00008 ATGATGATGAATCCCTTCTTTTACAGATTCTTGATTCTCCTTCCTCTCTTTGCACTCGTGGAATCTTCTCCATGCAACAAAAACACAGACCATGAGCTTCTCTTAAAAGCCTTCCAACATGTCTCTGGATTCAAACCTTCATGGTTCCAAAACAACTGTTCGTCGTCTCCCATTATTAAGAACATAGAGCTTCCTTCAAGAAACTTAAGCGGCAACATATCATGGAACTACCTAAAGAACATGTCAAATCTCCAAGTTCTCGATCTCTCCGGAAATTCCCTGCAAGGCCAAGTACCAAACATGTTATGGGCTTCTCCAAACTTACTAGTACTAAACCTCTCCAGAAACAGGTTCGGAGGAACCATTGCTTTCAATAACCAACTCAAAACACGAAACGGCACCGTTTCATCCTCATCGCTTCAAGTTCTGAACCTCTCACACAACAGGCTCACCAATCAGGTTCACCTCTCCGGTTTCACAAACCTCAAAACCCTAGACCTTTCCCATAACAACCTTGGAGCCTTGCCATGGGGGTTCCAGAATCTCACAAAACTGCAACACCTTGATCTCTCTAACTGCAACATCAAAGGAGCAGTGAAACAAATCTCTTCCCTTCACTCACTCACCTACCTGGACCTTTCCAACAACACTTTGAACGGAACATTCCCTTCAGATTTTCCTCCGTTGAACACCATCAAGTTCCTCAACATCTCACACAACAACTTCATCAAATCCACTGAACTAACCCCAAACAAGTACAAGAAGTTCGGCCAATCAGCGTTCATTAACGCCGGCAACAACTTCCACTTGAACTTCAACGCGTCCTCCAACCACCATTCAAAGAAGCAACCGACTCATAACAAACACAAGAAGCGCAAGTCAAAACAGAAAACCGTTTTGCTTGTGGCGGTATCGTGTGCGTCAGGGGTAGTTTTGGTATTGTTGTTGAGCGCGTGGGTTTTGCGGTGTTACTGTAGGAAGAGGGAAGAGGCGAAGAGGAACAAGTGGGCCATATCGAAACCTGTGCCGTTGACGAGCATCAAGATGGAGAAATCAGGGCCGTTCGCGTTCGAGACAGAGTCAGGGACGTCGTGGGTGGCTGACCTGAAAGAACCGTCGTCAGCGGCCGTCGTGATGTTCGAGAAGCCGTTGATGAGTTTGACTTTCAAGGACTTGATGAGTGCCACGTCACACTTCGGGAAAGACTCACAGCTTGCTGAGGGAAGGTGTGGGCCCGTGTACCGAGCTGTTTTACCAGGAGAGATCCACGTGGCAATCAAGGTTTTGGAAAACGCGAGGGACGTTGATCACGATGACGCTGTCAACATCTTCGTTGACCTCTCCAAGCTCAAGCACCCTAACCTCTTGCCTCTCTCCGGTTACTGCATTGCAGGGAAGGAGAAGCTAGTGTTGTACGAGTTCATGTCAAACGGGGACTTAGGAAGGTGGTTACACGAGCTGCCAACGGGTGACACCAACGTGGAGGATTGGAGTGGCGACACGTGGCAGATTCAAAACGGTGTCGGATCACCTGAAAAGATGGCTTGGCCAACACGACACCGTATCGCCGTTGGTGTGGCGCGTGGCCTCGCATTCCTCCACCACGCCGGATCTAGGCCCGTCGTTCACGGCCACTTGGTAACATCAAATATTTTACTCTCCGATGACTTCGAACCACGAATCGCTGATTTTGGCTTGAGGAAATTCGGCCAGGAACAGAACGCGCCGATTTGCAGCACCGAGACGGACGTCTACTGCTTCGGTGTGGTGTTGATGGAGCTTCTCACGGGGCGGTCCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGCTTGTTAGGGAGGGCCACGGTGTTCGCGCCTTGGATGAGAGGCTCGGACTTGGTGACTCAGAGGCTGAGATGGTGGAGAGCCTCCGAGTGGCGTACCTTTGCACTGCCGAGTCGCCGGCGAAGAGACCCACCATGCAGCAGGTGTTGGGTCTTCTCAAGGACATTCATCCGAGTGGCGCACTCGACTGA 2019 0.5047 MMMNPFFYRFLILLPLFALVESSPCNKNTDHELLLKAFQHVSGFKPSWFQNNCSSSPIIKNIELPSRNLSGNISWNYLKNMSNLQVLDLSGNSLQGQVPNMLWASPNLLVLNLSRNRFGGTIAFNNQLKTRNGTVSSSSLQVLNLSHNRLTNQVHLSGFTNLKTLDLSHNNLGALPWGFQNLTKLQHLDLSNCNIKGAVKQISSLHSLTYLDLSNNTLNGTFPSDFPPLNTIKFLNISHNNFIKSTELTPNKYKKFGQSAFINAGNNFHLNFNASSNHHSKKQPTHNKHKKRKSKQKTVLLVAVSCASGVVLVLLLSAWVLRCYCRKREEAKRNKWAISKPVPLTSIKMEKSGPFAFETESGTSWVADLKEPSSAAVVMFEKPLMSLTFKDLMSATSHFGKDSQLAEGRCGPVYRAVLPGEIHVAIKVLENARDVDHDDAVNIFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGDTNVEDWSGDTWQIQNGVGSPEKMAWPTRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNILLSDDFEPRIADFGLRKFGQEQNAPICSTETDVYCFGVVLMELLTGRSGTAETVVWVRKLVREGHGVRALDERLGLGDSEAEMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPSGALD 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91016g00008 672 ProSiteProfiles Leucine-rich repeat profile. 139 160 IPR001611 GO:0005515
Stsc91016g00008 672 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 474 - -
Stsc91016g00008 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 59 665 - -
Stsc91016g00008 672 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Stsc91016g00008 672 ProSiteProfiles Protein kinase domain profile. 399 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91016g00008 672 SUPERFAMILY L domain-like 54 245 - -
Stsc91016g00008 672 MobiDBLite consensus disorder prediction 275 294 - -
Stsc91016g00008 672 Gene3D Ribonuclease Inhibitor 26 129 IPR032675 -
Stsc91016g00008 672 SUPERFAMILY Protein kinase-like (PK-like) 387 662 IPR011009 -
Stsc91016g00008 672 Pfam Protein tyrosine and serine/threonine kinase 402 570 IPR001245 GO:0004672|GO:0006468
Stsc91016g00008 672 FunFam Calmodulin-binding receptor kinase CaMRLK 138 248 - -
Stsc91016g00008 672 SMART LRR_typ_2 182 204 IPR003591 -
Stsc91016g00008 672 SMART LRR_typ_2 205 228 IPR003591 -
Stsc91016g00008 672 SMART LRR_typ_2 81 105 IPR003591 -
Stsc91016g00008 672 SMART LRR_typ_2 159 181 IPR003591 -
Stsc91016g00008 672 PRINTS Leucine-rich repeat signature 205 218 - -
Stsc91016g00008 672 PRINTS Leucine-rich repeat signature 162 175 - -
Stsc91016g00008 672 Pfam Leucine rich repeat 139 195 IPR001611 GO:0005515
Stsc91016g00008 672 Pfam Leucine rich repeat 67 118 IPR001611 GO:0005515
Stsc91016g00008 672 Gene3D Phosphorylase Kinase; domain 1 359 474 - -
Stsc91016g00008 672 Gene3D Ribonuclease Inhibitor 130 309 IPR032675 -
Stsc91016g00008 672 Gene3D Transferase(Phosphotransferase) domain 1 475 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91016g00008 Stsc-Chr91016 14811 17425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91016g00008 58 665 Receptor kinase-like Gene Family AT5G07280 31.797 2.93e-75 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Stsc91016g00008 PK_Tyr_Ser-Thr 6.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91016g00008 - - gmx:100778920 924.85