Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91008g00002 ATGGCGATTTCCTTCGCAGCGTTGAACCTTCGGAGCATGGCACTCCGATCATCATCGAAGCTTCTCCCTCGTTCTTCTTCTCATCTTCTCCCTATTCACATGCAGCATTCAGCTCCTCTCCTCACTCGAAAGATAAGCGTGGATGCTAGGAGCATAGCTTCCCAGCTTAATAGCTCTGGTTTGTTGAAGACTCAGGGCCTTATTGGAGGTAAATGGAGTGATTCCTATGATGGGAAAACGATACAGGTTTATAATCCTGCAACGGGTGAGTCTATAGCAGATGTTGCGTGCATGGGTCGAAAAGAGACAAATGATGCGATTGCTTCAGCATATGATGCATATAAATCATGGAGCAAAACCACTGCTGCTGAGAGAAGCAAACTTCTGAGGAAATGGTATGATTTACTAATGGCTCATAAAGAACAGCTAGCTCAACTTATGACCTTGGAGCAAGGGAAGCCTCTTAAGGACTCTATGGGTGAGGTAAACTATGGGGCTGGCTTTATTGAGTTTTCAGCTGAGGAGGCTAAACGCATATATGGGGATATAATTCCTGCTCCTATGTCTGATCGACGGTTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCGATCACACCGTGGAACTTCCCTCTGGCTATGATCACACGAAAGGTTGGTCCAGCTCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACTGCATTAGCTGCAGCTGAACTCGCTGTTCAAGCTGGAATACCTGCGGGTGCTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGCGATGCTTTACTTGCAAGTACACAGGTACGCAAAATCACGTTCACAGGCTCAACAGCTGTTGGAAAGAAATTGATGGCAGGCTCTGCTGAGACAGTAAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCGTGCATAATTTTTGATGATGCTGACATTGATGTTGCAGTTAAAGGAACTCTTGCAGCAAAGTACCGTAACAGTGGACAAACATGTGTTTGTGCAAACAGAATTCTTGTGCAAGAAGGTATATATGATAAATTTGCAAAGGCTTTGGTTGATGCTGTTCGGAATATGAAAGTTGGGAGTGGTTTTGGTGAAGATGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCCGTTAACAAGGTTGAGACCTTGCTTCAAGATGCTACATCAAAGGGGGCAAAGGTAATGCTTGGGGGTAAAAGACATAGCCTTGGATTTACCTTTTATGAACCAACAGTTGTTGGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGTATTTGGACCTGTTGCACCACTTATGAGGTTCAAAACTGAAGAGGATGCTATCCGGATTGCCAATGACACAAATGCAGGTTTGGGTTCGTACGTGTTTACAAACAGTATCCAACGTTCATGGCGTGTTGCGGAGGCTCTCGAATATGGACTTGTCGGTATTAATGAAGGAGTAATCTCAACTGAGGTGGCACCATTTGGTGGTTTTAAACAGTCGGGCCTTGGAAGAGAAGGCTCAAAGTATGGGATGGATGAATATTTGGAGATCAAGTATGTGTGCTTGGGAAACATGAAGAAAGAATAA 1620 0.4469 MAISFAALNLRSMALRSSSKLLPRSSSHLLPIHMQHSAPLLTRKISVDARSIASQLNSSGLLKTQGLIGGKWSDSYDGKTIQVYNPATGESIADVACMGRKETNDAIASAYDAYKSWSKTTAAERSKLLRKWYDLLMAHKEQLAQLMTLEQGKPLKDSMGEVNYGAGFIEFSAEEAKRIYGDIIPAPMSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELAVQAGIPAGAVNVVMGNAPEIGDALLASTQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIIFDDADIDVAVKGTLAAKYRNSGQTCVCANRILVQEGIYDKFAKALVDAVRNMKVGSGFGEDVVQGPLINEAAVNKVETLLQDATSKGAKVMLGGKRHSLGFTFYEPTVVGDVNSDMRISREEVFGPVAPLMRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGINEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMKKE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91008g00002 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Stsc91008g00002 539 FunFam Succinate-semialdehyde dehydrogenase I 78 320 - -
Stsc91008g00002 539 Pfam Aldehyde dehydrogenase family 72 531 IPR015590 GO:0016491
Stsc91008g00002 539 FunFam Succinate-semialdehyde dehydrogenase I 311 500 - -
Stsc91008g00002 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Stsc91008g00002 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 525 IPR016162 GO:0016491
Stsc91008g00002 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 536 - -
Stsc91008g00002 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Stsc91008g00002 539 FunFam Aldehyde dehydrogenase, putative 503 529 - -
Stsc91008g00002 539 CDD ALDH_F5_SSADH_GabD 83 533 - -
Stsc91008g00002 539 NCBIfam succinate-semialdehyde dehydrogenase 83 529 IPR010102 GO:0009013|GO:0009450
Stsc91008g00002 539 SUPERFAMILY ALDH-like 60 536 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91008g00002 Stsc-Chr91008 18690 29385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91008g00002 36 539 Aldehyde Dehydrogenase Gene Family AT1G79440 77.953 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91008g00002 K17761 - gmx:100808318 894.034