Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91006g00004 ATGCCACCGTCCTTGCACTTCCGTCGCTCTCTTTGTACTATGCTTGCCCAGCTTTTCTCGCCCTCTGCTGGCTGTTTTCGGCGGTCTCTGAGTTGCTTCTCTGTTTATTGCCATTTGCGCCGAAATCCTGGTAGGTTTGTCAAGCACCTTGAAGCTTGGTGTGATAGTACTTCTCAATTGCGATTGAGAAAGAGTGGACATAGGCAAGAGTTTCGCCGAACCACTATAAATCTTTCGAGGAGAAAGGTTAGAGAGCCCAAGGAGGAAACCGTCACTCTTGGCCCTGCTGTTAAAGAGGGCGAACATGTTTTTGGTATTGCTCGCATTTTTGCATCATTCAATGACACCTTTATTCATGTGACTGATTTATCTGGAAGGGAAACCCTTGTCCGCATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGATAAATCATCCCCATATGCTGCTATGCTTGCAGCACAGGATGTTGCTGCTAGATGCAAGGAGCTGGGAATAACTGCTCTTCATATCAACCTCCGAGCCACTGGTGGAAACAAGACAAAAACGCCTAGCCCTGGTGCTCAGTCTGCGCTCCGTGCCTTGGCTCGGTCTGGAATGAAAATTGGCCGCATAAGCAAGTGGAGGTGGAGCTCAGAAACAAAGGATCCTGCGGAATGA 660 0.4848 MPPSLHFRRSLCTMLAQLFSPSAGCFRRSLSCFSVYCHLRRNPGRFVKHLEAWCDSTSQLRLRKSGHRQEFRRTTINLSRRKVREPKEETVTLGPAVKEGEHVFGIARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDKSSPYAAMLAAQDVAARCKELGITALHINLRATGGNKTKTPSPGAQSALRALARSGMKIGRISKWRWSSETKDPAE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91006g00004 219 Hamap 30S ribosomal protein S11 [rpsK]. 68 216 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc91006g00004 219 Gene3D Ribosomal protein S11 78 207 IPR036967 GO:0003735|GO:0005840|GO:0006412
Stsc91006g00004 219 FunFam 40S ribosomal protein S14 78 214 - -
Stsc91006g00004 219 SUPERFAMILY Translational machinery components 101 206 - -
Stsc91006g00004 219 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 80 206 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc91006g00004 219 Pfam Ribosomal protein S11 105 206 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91006g00004 Stsc-Chr91006 22963 26414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91006g00004 78 205 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 86.719 7.01e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91006g00004 K02955 - gmx:100780604 239.965