Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91003g00009 ATGATTTCTTCTGGGCTGAACTTGGTGATGACTGTGATTGGGTTCGCGGTGAGCACCATGTTCATTGTGTTCGTGTGCACGAGGCTTGTGTGTGCTCGAATCCACTTGAATGCTTCAAGGAGATCCTTTCCCATTGCTTCCAGATCCAATCTCAGCATGATGGAACGGGGTTGGCATGGTCTTGAACGCACAACTGTAGCTAAATTTCCAACAAAGAAGTACAGTGACAAGTTCTTTTCTGCTGCAGAAAATTCTCAGTGTACAGTCTGTCTTTCGGAGTACCAAGGTGAAGATATTCTGCGGATCCTCCCCTACTGTGGACACTCATTCCATGTCACCTGCATAGACTTGTGGCTGCAGCAGAATTCCACTTGTCCAGTTTGTCGAATATCATTGAGGGAATTTACCGAGAGAAAGCGGTTAATGCAACCCTTATTCAGCTCTTCTTTACGACCTCATCGTAGTGCAGAACCCATTGAGAACCCTCATTATCTCTGTATTATGGGTGATAATGGGTTACCATCAAGAACCCCAGACAACCGTGGGGCAAACGTGATTCAAGAGGACAGATTTCCATCCGGTCGCAGTGGAGCTGGAGCAGCTGCTACAGATAGCATCACCTGTCTGAGTCCGGATGATCTTGTTAAAGATGAAGAGAAGAAGCATGTAGAGAGCCCGTCAAACTTCTAG 690 0.4667 MISSGLNLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFPIASRSNLSMMERGWHGLERTTVAKFPTKKYSDKFFSAAENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFTERKRLMQPLFSSSLRPHRSAEPIENPHYLCIMGDNGLPSRTPDNRGANVIQEDRFPSGRSGAGAAATDSITCLSPDDLVKDEEKKHVESPSNF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91003g00009 229 MobiDBLite consensus disorder prediction 177 205 - -
Stsc91003g00009 229 Pfam Ring finger domain 86 129 IPR001841 -
Stsc91003g00009 229 SUPERFAMILY RING/U-box 80 135 - -
Stsc91003g00009 229 CDD RING-H2_EL5-like 86 129 - -
Stsc91003g00009 229 SMART ring_2 87 128 IPR001841 -
Stsc91003g00009 229 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Stsc91003g00009 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Stsc91003g00009 229 PANTHER OS11G0150450 PROTEIN 1 186 - -
Stsc91003g00009 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91003g00009 Stsc-Chr91003 35340 38101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91003g00009 45 132 C3H Transcription Factor Family AT4G10150 43.182 7.26e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91003g00009 - - gmx:100786109 387.882