Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91003g00007 ATGGGGAGAAGAAACGGGGGAAGGCCACTGCACGGAACCCTCCGCCGTCGATTGGAGTCCTGCAAGTCCAGCTACTCCACCGTCGATGATATCGTTAACCACCTCCGCTCCACTTATCCCGATTACCAACGCACCAAGCACCAAGCCCTCACTCGTTTAGTTCAACAAGTCCTCGAGCCACGTGCGAAACAAACCCCCAAAGTCTCTCCCACGCGCAGGGTTTACGATGATGACGAAGATGATCTTGAAGAAAGAGGTCGAAGCGCGCTCCGAAAGAGACCGAAGAGAATCGATGAAGGTGAAGAGAGGTTGCAGAAGATGGAGGCTTTCCACCTGCGGAAACGGATGCAGGGCGGAGAAGAAGCTCAGGGTTCTGCATCTACGTCGAGCGCCTCCGGGAGCAGCGGCAGTGAGGAGGAGGAGGATGATGATTCAGTGTCTGTGTCGACATCGGAGGACGCAATTTACGGGGAGAAGTACGAACCTGCCGTCGATTTGATGAAGACAATGCTGCGGAAAGCGTACACTCCCACGAAGGATGATAGGAAGAAGAAACCAGTTGTGGAGGATAAGAACGTTGAATTGGAGGTGGCCAATAGTGGCAAGGTTACTAATGAGGTTTGTGCTGTGAACGGAGGTGGAGGTGAACAGAAGGCGGCAGGGAAGGCGGGGAATTCGAAGAGTTCCGTTTCGAATGGCACCGGCGGTGGCCACAGCGATATTGAGCTGAAACAGAAGGCAGGACCGAGGTTCAGTGATTTGGGTGGGATGAAGGATATTTTGGAGGAGCTGTTGATGGAAGTGATTGTGCCGTTGTATCATCCCGAGTTGCCAAGAGAGCTGGGCGTTACTCCAACTACTGGAATCCTGCTGCATGGTCCACCCGGTTGTGGCAAGACAACACTGGCTCACGCCATAGCTAATGAGACAGGTCTTCCGTTCTATCAGATATCAGCTACTGAATTGGTTTCTGGAGTCTCAGGTGCATCTGAAGAGAATATCAGAGAGCTTTTCACTAAAGCATATAGGACTGCCCCATCAATCGTCTTCATTGATGAGATTGATTCAATTGCTTCAAAAAGAGAGAACTTACAGCGAGAGATGGAGAAAAGAATTGTAACACAGTTACTGACCAGCATGGATCAATCAAGTAGTAGTTTGAAATCAGCTAATGATTCGGACAGTTCTAATTTTCAACCTGGCTATGTTCTAGTAATTGGAGCTACAAATAGGCCCGATGCTCTTGATCCAGCCTTGAGAAGGCCCGGGCGATTTGACCGTGAGATTCTTGTTGGCATTCCTGATGAATCTTCAAGAGAACATATCCTTTCTTTGCTTACTCGCAATCTTAAACTTGAGGGTTCATTGGATCTTAAACAAATAGCGAGGTCTACACCAGGATATGTTAGTGCTGATTTGGTAGCTGTGGTTAAGGAGGCTGGTAATTTGGCAATAAAGAGAATCATTCGTCAAAGGAAATGGGAACTATCTCAAGATCTTACAAGGTATCTTGGAGACTGGTGGAAGGAACCTTGGTCGCATGAAGATGTGGATAAGCTTGTCTGCACAATGTTCGATTTCCAGGAGGCAGTGAAAAAAGTGCAGCCTTCATTAAGAAGAGAGGGCTTCTCATCCGTTCCCAATGTAAAATGGGAAGATGTTGGGGGCCTTGATTGTTTGAGGGAGGAGTTTGAATACAGTATAATAAGGCCATTAAAATATCCTGAGGTTCATAAGACATTTGAGGTGGTAAATGAGACTGGAATTTTGCTTTTCGGGCCCCCTGGTTGTGGTAAAACTCTTATTGCCAAAGCTGTTGCGAATGAGGCAGGAGCTAATTTCATTCATATTAAGGGACCTGAACTCTTAAATAAATTTGTTGGAGAAAGTGAGCGGGAAGTTCGACAACTGTTTAGTCGTGCAAGGGCATGTTCACCCTGTATAGTATTTTTTGACGAGGTGGATGCTTTGTCAACCAAACGCGATTCAGAAGGTGGATCAGTTGTTGAACGAGTAGTGAACCAGTTACTTATTGAACTAAATGGTGCTGATCATCGCCAAGGTGTTTTTGTCATTGGTGCTACAAATAGGCCTGATGTGATGGATGAGGCTCTCCTCCGCCCTGGTAGACTAGGTAAACTTCTTTATGTTCCTTTGCCAGGTGCTGACGAGCGATTTTCAATATTGAAAGCTCTTGTAAGGAAGAAGCCTGTTGATTCTACTGTGGATTTGAGAGCAACAGCCGAAGCTTGTGAAAATTTTAGTGGTGCAGACCTTGCTGCATTGATAAATGAAACAGCCAAAGCTGCTGTTAATGAGAAATTGACCTCAGTTGAAGCTACTAATGATGATAATAATTACAAGCCAAGACATTTCGAGATAGCGCTTAGTAAAGTCTCTCCCTCTGTGTCTCCGGCGGAAAGGCGTAGATTTGAGCGTTTGGCAGAGCGCTTTAAAGCATCATGA 2466 0.4651 MGRRNGGRPLHGTLRRRLESCKSSYSTVDDIVNHLRSTYPDYQRTKHQALTRLVQQVLEPRAKQTPKVSPTRRVYDDDEDDLEERGRSALRKRPKRIDEGEERLQKMEAFHLRKRMQGGEEAQGSASTSSASGSSGSEEEEDDDSVSVSTSEDAIYGEKYEPAVDLMKTMLRKAYTPTKDDRKKKPVVEDKNVELEVANSGKVTNEVCAVNGGGGEQKAAGKAGNSKSSVSNGTGGGHSDIELKQKAGPRFSDLGGMKDILEELLMEVIVPLYHPELPRELGVTPTTGILLHGPPGCGKTTLAHAIANETGLPFYQISATELVSGVSGASEENIRELFTKAYRTAPSIVFIDEIDSIASKRENLQREMEKRIVTQLLTSMDQSSSSLKSANDSDSSNFQPGYVLVIGATNRPDALDPALRRPGRFDREILVGIPDESSREHILSLLTRNLKLEGSLDLKQIARSTPGYVSADLVAVVKEAGNLAIKRIIRQRKWELSQDLTRYLGDWWKEPWSHEDVDKLVCTMFDFQEAVKKVQPSLRREGFSSVPNVKWEDVGGLDCLREEFEYSIIRPLKYPEVHKTFEVVNETGILLFGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKFVGESEREVRQLFSRARACSPCIVFFDEVDALSTKRDSEGGSVVERVVNQLLIELNGADHRQGVFVIGATNRPDVMDEALLRPGRLGKLLYVPLPGADERFSILKALVRKKPVDSTVDLRATAEACENFSGADLAALINETAKAAVNEKLTSVEATNDDNNYKPRHFEIALSKVSPSVSPAERRRFERLAERFKAS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91003g00007 821 Gene3D - 547 812 IPR027417 -
Stsc91003g00007 821 Gene3D - 240 433 IPR027417 -
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 222 238 - -
Stsc91003g00007 821 Pfam ATPase family associated with various cellular activities (AAA) 589 718 IPR003959 GO:0005524|GO:0016887
Stsc91003g00007 821 Pfam ATPase family associated with various cellular activities (AAA) 289 431 IPR003959 GO:0005524|GO:0016887
Stsc91003g00007 821 ProSitePatterns AAA-protein family signature. 689 707 IPR003960 GO:0005524|GO:0016887
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 115 154 - -
Stsc91003g00007 821 FunFam Ribosome biogenesis ATPase RIX7 239 432 - -
Stsc91003g00007 821 SMART AAA_5 285 435 IPR003593 GO:0016887
Stsc91003g00007 821 SMART AAA_5 585 721 IPR003593 GO:0016887
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 121 135 - -
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 215 247 - -
Stsc91003g00007 821 Pfam AAA+ lid domain 742 781 IPR041569 -
Stsc91003g00007 821 Pfam AAA+ lid domain 456 490 IPR041569 -
Stsc91003g00007 821 PANTHER AAA-FAMILY ATPASE 95 820 - -
Stsc91003g00007 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 516 IPR027417 -
Stsc91003g00007 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 817 IPR027417 -
Stsc91003g00007 821 Pfam Nucleolin binding domain 18 59 IPR031996 -
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 58 103 - -
Stsc91003g00007 821 MobiDBLite consensus disorder prediction 70 103 - -
Stsc91003g00007 821 FunFam ATPase, AAA family protein 547 725 - -
Stsc91003g00007 821 Gene3D - 434 541 - -
Stsc91003g00007 821 ProSitePatterns AAA-protein family signature. 403 421 IPR003960 GO:0005524|GO:0016887
Stsc91003g00007 821 Gene3D - 720 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91003g00007 Stsc-Chr91003 28813 33324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91003g00007 526 819 Calmodulin-binding Proteins AT3G56690 44.257 8.14e-70 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91003g00007 K14571 - gmx:100809594 1003.82