Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc909g00004 ATGATGCCTGCAAAGAAGCCTTCATGGATGATGCCAGTAACACATGGATATTATGTGGTGGAACATCATCAAGGTTCTGAGAAAGATGTGTTGAACTTTGATTCAGTTGTGGTTCAAAGAGAGCAAATGGATCATAATGAATTGTGGTATTTCGGAATCTTTGATGCTGTAGTTGGAGATTGCGTTACCAAGTTCATGCAGTCCAATTTCTTCAACAAGAAGCTTCAAGAGTCTCATATAAGGAGGAAAAGCAAGGAAACACTGAAGAGAGCATACCTCGGTGCAAGGGCGAAGATAAGAGAGGAATATGAAGCAGATGAAAGAAGCAGAATGGGTGCAGGATCATGTGTTATGGTGATAAATGGAGAGAAGCTTGTGATAGCAAACATGGGAGATTACAGAACTGTTGTATGCAGAGATGGCATAGCTCATCATTACACATCATCTGGCAGACACCACCAACATTCATCGAAAACACATTGGTCTCGCAGACTCTTTCCAGGTAAAAGTCATTCTAGAGGCTCAGAACTTGTTGTCAAAGGAGAAAGGATTGATTCAGATACTGAGTTTCTGATATTGGCCAGCAATGGTATATGGGAGGTGATGCAGAACCAAGAGGCAGTGAATCTGATAAGTCACATAGAGGATCCACAAGAAGCAGCAGAATGCTTGGCAAAGGAAGCTATGAATAGGATGAGTAGAAGCAACATCTCATGCTTAATCATTCGCTTTGAATGA 738 0.4146 MMPAKKPSWMMPVTHGYYVVEHHQGSEKDVLNFDSVVVQREQMDHNELWYFGIFDAVVGDCVTKFMQSNFFNKKLQESHIRRKSKETLKRAYLGARAKIREEYEADERSRMGAGSCVMVINGEKLVIANMGDYRTVVCRDGIAHHYTSSGRHHQHSSKTHWSRRLFPGKSHSRGSELVVKGERIDSDTEFLILASNGIWEVMQNQEAVNLISHIEDPQEAAECLAKEAMNRMSRSNISCLIIRFE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc909g00004 245 MobiDBLite consensus disorder prediction 148 167 - -
Stsc909g00004 245 Gene3D - 174 245 IPR036457 -
Stsc909g00004 245 ProSiteProfiles PPM-type phosphatase domain profile. 32 244 IPR001932 -
Stsc909g00004 245 CDD PP2Cc 32 244 IPR001932 -
Stsc909g00004 245 PANTHER PROTEIN PHOSPHATASE 15 244 IPR015655 GO:0004722|GO:0006470
Stsc909g00004 245 Gene3D - 13 165 IPR036457 -
Stsc909g00004 245 SUPERFAMILY PP2C-like 15 244 IPR036457 -
Stsc909g00004 245 Pfam Protein phosphatase 2C 42 148 IPR001932 -
Stsc909g00004 245 Pfam Protein phosphatase 2C 183 237 IPR001932 -
Stsc909g00004 245 SMART PP2C_4 13 242 IPR001932 -
Stsc909g00004 245 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc909g00004 Stsc-Chr909 21821 23248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc909g00004 5 244 PP2C-type Phosphatase Gene Family AT3G23360 49.799 3.11e-77 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc909g00004 K19704 - gmx:100794054 344.354