Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90997g00002 ATGACAACTGAAAATTATCCACTAGCATATTTCTGCACTCGATGTTGTCTAGTAAGCCCACCCAACTCGTGTCCAAGTAAGATACAAGGCTGTTATTGTACTTCTCCTACTACTCAAATTATTTCTCCTCCTCTACCACCGCGACCGCCGTTGTTGCCGCCACCACCACCATTGCTATTGTCACCGCCACCATCACCACGACTTCTTTCTCCTCCGCCGCCGCTGCCTCAAACTCCCCCGCCGGCGCTCCCTTCCGCTAAACCGACTCAGATACTGCTTTCTCCTCCCCCAACTTCTTCAACTCCTGCACCATCTTCTTCCTCAAGCGGCCTCATTGTTGGAATCGCGGCAATCTCGTTCGCCTTTTTGATTCTGTTGCTTAGCGCTTTTGCCATTTTTTACTGCAAAAATAGGAAGAGAGAACATTGTAACAAGTACCACGCACCCCAAGTGAAGAATGGAATAATGATGGGTACCAGAATATTCTCATACGAGGAATTGGCGCGGGCAACGGATGGGTTCTCGGAATCAAAGTTGGTTGGAGAAGGTGGGTTCGGTTATGTCCACAAAGGGGTTCTTCCCAACGGCATGGAGGTTGCCATCAAACAGCTCAAGGGTGGAAGTAGCCAGGGTGAGCGTGAATTCCAAGCTGAAGTTGATATAATCAGTAGGATTCATCATCGCCATCTCGTTTCTTTGCTTGGATATTGCATTGCCGGCACCCACAGACTCCTCGTCTATGAATTTGTTCCAAACAATTCATTACACTTCCATCTACATGGTTATCCCAAGATCATCCATCGTGATATAAAGGCCTCTAACATTCTCCTCGATTTTAATTTTCAAGTAAAGCTGGCTGATTTTGGGCTTGCCAAATTCTGTCCTGATATATATACTCATGTTTCCACTCGAGTGATGGGAACTTTAGGGTATGTAGCTCCCGAATATGCATCTAGTGGAAAACTAACAGAGAAAGGCGACGTTTTCTCCTTCGGAGTGATGCTTCTGGAGCTAATTACTGGCCGCCGACCAATAATAATTGATTCACCTCATGCTTCCAGAGTTGGTTTGGTACATTGGGCAATGCCTTTGCTAACACAAGTTTTGAAGGATAATAATTTTGATGTTGTGGTTGACCAAAAGCTCCAAAATCAGTATGAGCCAACTCAAATGGCTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAACCAAAGCTTCGACCAAAGATGAGCCAAATAGTTCGAGCTTTGGAAGGAGATGCATCTCAAGTAGCTGAATTGATTTCTAATGTATGCTTAGATTCTGATTCGGCTGCGTACAAACGAGACATGATCAAAATCATTGGTGACATGAGTAGATCCACAAGCTAA 1377 0.4532 MTTENYPLAYFCTRCCLVSPPNSCPSKIQGCYCTSPTTQIISPPLPPRPPLLPPPPPLLLSPPPSPRLLSPPPPLPQTPPPALPSAKPTQILLSPPPTSSTPAPSSSSSGLIVGIAAISFAFLILLLSAFAIFYCKNRKREHCNKYHAPQVKNGIMMGTRIFSYEELARATDGFSESKLVGEGGFGYVHKGVLPNGMEVAIKQLKGGSSQGEREFQAEVDIISRIHHRHLVSLLGYCIAGTHRLLVYEFVPNNSLHFHLHGYPKIIHRDIKASNILLDFNFQVKLADFGLAKFCPDIYTHVSTRVMGTLGYVAPEYASSGKLTEKGDVFSFGVMLLELITGRRPIIIDSPHASRVGLVHWAMPLLTQVLKDNNFDVVVDQKLQNQYEPTQMASMLASAAASIRYEPKLRPKMSQIVRALEGDASQVAELISNVCLDSDSAAYKRDMIKIIGDMSRSTS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90997g00002 458 FunFam Proline-rich receptor-like protein kinase PERK8 146 249 - -
Stsc90997g00002 458 Gene3D Transferase(Phosphotransferase) domain 1 255 433 - -
Stsc90997g00002 458 MobiDBLite consensus disorder prediction 52 105 - -
Stsc90997g00002 458 Pfam Protein kinase domain 258 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90997g00002 458 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Stsc90997g00002 458 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 263 448 IPR047117 -
Stsc90997g00002 458 ProSiteProfiles Protein kinase domain profile. 174 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90997g00002 458 SUPERFAMILY Protein kinase-like (PK-like) 151 419 IPR011009 -
Stsc90997g00002 458 SMART serkin_6 174 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90997g00002 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc90997g00002 458 Gene3D Phosphorylase Kinase; domain 1 135 249 - -
Stsc90997g00002 458 MobiDBLite consensus disorder prediction 52 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90997g00002 Stsc-Chr90997 7925 18078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90997g00002 143 437 Trihelix Transcription Factor Family AT4G32710 55.319 3.65e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc90997g00002 Pkinase 7.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90997g00002 - - aip:107637227 514.998