Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90993g00002 ATGTATAAAGGCCTCCAGAGATGCGGGAAGAGTTGCAGGCTAAGGTGGACAAACTACCTTCGTCCTGATCTTAAACATGGCCAATTCTCTGATTCTGAAGAACAAACTATTGTGAAGCTTCACTCAGTTTTTGGCAACAGGTGGTCACTCATAGCAGCACAGCTGCCAGGACGCACCGACAATGATGTGAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTTTCAGGCATGGGAATTGACCCTGTGACGCATAAGCCATTCTCACACCTAATGGCTGAAATTGCCACAACCTTGGCACCGCCGCAGGCAGCGCACCTTGCTGAAGCAGCGCTTGGCTGCTTCAAAGACGAGGTGCTCCACCTTCTGACGAAGAAGCCAATTAGCTTCCAAGGCCAACACTCAACTATGGCACAAGGGAATAACATTACAGATTATATTAACTGTAAGCCAGAAGAAAAGGATGACACTGTTGAAAAGATTAAGCTTGGATTATCAAAGGCAATACAGGAAGAACCTGAAATGATGCCCTCAAGTAAGCATTGGGATTCCAGTGCAGCTACATCTGCAAGTTATGCAATGCCATACAGTGTTTTCCCAACAGTGCCTGGGTTTCAGTATAGTCCGGCACCTTTCGGGAGCAAAGGAGATGCATCGCCGTGGAGCCAAAGTCTTTGCACTGGGAGCACATGCACAGCTATGGATCAGCAAAACCAGTTGCATGAAAAACTTGAAAATGGGGATGAATCCGAGGCTACAAAAGAAATTAGAAACTTATCCAACATTTTCAACTCAGATTGTGTCATGTGGGATTTACAAGCAGATGACTTAATAAACCCAATGGTATAA 849 0.4535 MYKGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPISFQGQHSTMAQGNNITDYINCKPEEKDDTVEKIKLGLSKAIQEEPEMMPSSKHWDSSAATSASYAMPYSVFPTVPGFQYSPAPFGSKGDASPWSQSLCTGSTCTAMDQQNQLHEKLENGDESEATKEIRNLSNIFNSDCVMWDLQADDLINPMV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90993g00002 282 PANTHER F14D16.11-RELATED 4 280 - -
Stsc90993g00002 282 FunFam transcription factor MYB80 28 88 - -
Stsc90993g00002 282 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Stsc90993g00002 282 CDD SANT 29 71 IPR001005 -
Stsc90993g00002 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Stsc90993g00002 282 Pfam Myb-like DNA-binding domain 27 69 IPR001005 -
Stsc90993g00002 282 Gene3D - 3 25 - -
Stsc90993g00002 282 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Stsc90993g00002 282 SMART sant 25 73 IPR001005 -
Stsc90993g00002 282 Gene3D - 27 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90993g00002 Stsc-Chr90993 19395 20331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90993g00002 4 282 MYB Transcription Factor Family AT5G56110 52.128 8.54e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90993g00002 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90993g00002 K09422 - gmx:100800764 495.352