Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90992g00005 ATGAAGTGGGAAATGGAAATATTGTCTCCAACTACAACACCTTATAATCCAAATTCCAACCTCAGCAACACCACCAGCAGCTTCAATTGGCTTCTTGGAGATGGAAGGAGCACCAGGTGGACACCAGAAGAGAACAAGCTCTTCGAGAACGCGCTGGCGGTTCACGACAAGGACACGCCGGACCGGTGGCACCAGGTGGCTGCAATGATACCTGGCAAGACAGTTGGAGATGTTATCAAGCAATATAAGGAATTAGAAGTCGATGTGTGTAACATTGAGGCCGGTTTGGTCCCGTTTCCGGGATTGTTCTTGCTTGGTTTGAAGAAGTATGGGAAAGGTGACTGGAGAAACATTTCGCGGAATTTCGTGATAACAAGAACACCAACACAGGTTGCAAGCCATGCTCAGAAGTACTTCATAAGGCAACTCTCAGGGGGCAAAGACAAAAGGAGAGCAAGCATCCATGACATAACAACAGTCAATGTCACCGAAACCGGGACAGCAACTTCTTCAGAAGACACCAAAAGTTCTATGATCCTCTCACAGCAACAAAATTGTAGTGCTGCTGCTACTATACCAAGAACTCATCATCATTTTCAGTGGAATAATCAACAACCAAATAATGCAGCAGGAGGAGGAGGAGTAGCTGTGGAAAAAGTTTTCAACTCTCGTTATGGTGTTAACTCATTTGGTGTGACAATAATGGAAGCTCAGAATCTGAACAAGAGTTGTGTTGAATCTTCTTCATCTTCTTCTTACTTAGGACCTCCTCAGACACAGAACCTGGTTTTCCAAATGCAACAACAATCTTCACAACAACAACAACAACACTATTCACATGCATAA 846 0.4409 MKWEMEILSPTTTPYNPNSNLSNTTSSFNWLLGDGRSTRWTPEENKLFENALAVHDKDTPDRWHQVAAMIPGKTVGDVIKQYKELEVDVCNIEAGLVPFPGLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNVTETGTATSSEDTKSSMILSQQQNCSAAATIPRTHHHFQWNNQQPNNAAGGGGVAVEKVFNSRYGVNSFGVTIMEAQNLNKSCVESSSSSSYLGPPQTQNLVFQMQQQSSQQQQQHYSHA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90992g00005 281 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 36 100 IPR043363 -
Stsc90992g00005 281 Pfam Myb-like DNA-binding domain 103 139 IPR001005 -
Stsc90992g00005 281 Pfam Myb-like DNA-binding domain 39 83 IPR001005 -
Stsc90992g00005 281 FunFam transcription factor MYB1R1 101 144 - -
Stsc90992g00005 281 Gene3D - 101 143 - -
Stsc90992g00005 281 Gene3D - 34 99 - -
Stsc90992g00005 281 FunFam Transcription factor SRM1 33 99 - -
Stsc90992g00005 281 SUPERFAMILY Homeodomain-like 38 92 IPR009057 -
Stsc90992g00005 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 102 142 IPR006447 GO:0003677
Stsc90992g00005 281 CDD SANT 102 139 IPR001005 -
Stsc90992g00005 281 SUPERFAMILY Homeodomain-like 102 142 IPR009057 -
Stsc90992g00005 281 ProSiteProfiles SANT domain profile. 35 90 IPR017884 -
Stsc90992g00005 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 143 IPR017930 -
Stsc90992g00005 281 CDD SANT 39 85 IPR001005 -
Stsc90992g00005 281 SMART sant 36 88 IPR001005 -
Stsc90992g00005 281 SMART sant 95 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90992g00005 Stsc-Chr90992 38566 40413 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90992g00005 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90992g00005 - - hsyr:120180211 195.282